Strain Fitness in Pseudomonas simiae WCS417 around PS417_11605

Experiment: Urea (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11600 and PS417_11605 are separated by 10 nucleotidesPS417_11605 and PS417_11610 overlap by 4 nucleotidesPS417_11610 and PS417_11615 are separated by 10 nucleotides PS417_11600: PS417_11600 - urea ABC transporter permease, at 2,495,361 to 2,496,278 _11600 PS417_11605: PS417_11605 - urea ABC transporter permease, at 2,496,289 to 2,497,452 _11605 PS417_11610: PS417_11610 - urea ABC transporter ATP-binding protein, at 2,497,449 to 2,498,207 _11610 PS417_11615: PS417_11615 - urea ABC transporter ATP-binding protein, at 2,498,218 to 2,498,907 _11615 Position (kb) 2496 2497 2498Strain fitness (log2 ratio) -1 0 1at 2495.532 kb on + strand, within PS417_11600at 2495.532 kb on + strand, within PS417_11600at 2495.533 kb on - strand, within PS417_11600at 2495.580 kb on + strand, within PS417_11600at 2495.667 kb on + strand, within PS417_11600at 2495.668 kb on - strand, within PS417_11600at 2495.668 kb on - strand, within PS417_11600at 2496.070 kb on - strand, within PS417_11600at 2496.203 kb on - strandat 2496.277 kb on - strandat 2496.424 kb on + strandat 2496.424 kb on + strand, within PS417_11605at 2496.424 kb on + strand, within PS417_11605at 2496.425 kb on - strand, within PS417_11605at 2496.745 kb on + strand, within PS417_11605at 2496.746 kb on - strand, within PS417_11605at 2496.746 kb on - strand, within PS417_11605at 2496.895 kb on + strand, within PS417_11605at 2497.111 kb on - strand, within PS417_11605at 2497.201 kb on + strand, within PS417_11605at 2497.201 kb on + strand, within PS417_11605at 2497.202 kb on - strand, within PS417_11605at 2497.234 kb on + strand, within PS417_11605at 2497.303 kb on + strand, within PS417_11605at 2497.802 kb on - strand, within PS417_11610at 2497.949 kb on - strand, within PS417_11610

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea (N)
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2,495,532 + PS417_11600 0.19 +0.7
2,495,532 + PS417_11600 0.19 +0.1
2,495,533 - PS417_11600 0.19 -1.3
2,495,580 + PS417_11600 0.24 -1.2
2,495,667 + PS417_11600 0.33 +0.1
2,495,668 - PS417_11600 0.33 -0.9
2,495,668 - PS417_11600 0.33 -0.1
2,496,070 - PS417_11600 0.77 -0.5
2,496,203 - -0.6
2,496,277 - -0.0
2,496,424 + -1.6
2,496,424 + PS417_11605 0.12 -1.3
2,496,424 + PS417_11605 0.12 -0.2
2,496,425 - PS417_11605 0.12 +0.0
2,496,745 + PS417_11605 0.39 -0.5
2,496,746 - PS417_11605 0.39 -0.9
2,496,746 - PS417_11605 0.39 -0.5
2,496,895 + PS417_11605 0.52 -0.3
2,497,111 - PS417_11605 0.71 +0.5
2,497,201 + PS417_11605 0.78 +0.0
2,497,201 + PS417_11605 0.78 +0.1
2,497,202 - PS417_11605 0.78 -0.5
2,497,234 + PS417_11605 0.81 +0.2
2,497,303 + PS417_11605 0.87 +1.4
2,497,802 - PS417_11610 0.47 +1.1
2,497,949 - PS417_11610 0.66 -0.4

Or see this region's nucleotide sequence