Strain Fitness in Pseudomonas simiae WCS417 around PS417_08910

Experiment: Urea (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08905 and PS417_08910 are separated by 204 nucleotidesPS417_08910 and PS417_08915 overlap by 1 nucleotides PS417_08905: PS417_08905 - dihydrolipoamide dehydrogenase, at 1,938,848 to 1,940,284 _08905 PS417_08910: PS417_08910 - succinyl-CoA synthetase subunit beta, at 1,940,489 to 1,941,655 _08910 PS417_08915: PS417_08915 - succinyl-CoA synthetase subunit alpha, at 1,941,655 to 1,942,536 _08915 Position (kb) 1940 1941 1942Strain fitness (log2 ratio) -1 0 1at 1940.291 kb on + strandat 1940.291 kb on + strandat 1940.294 kb on + strandat 1940.439 kb on + strandat 1940.439 kb on + strandat 1942.616 kb on + strandat 1942.616 kb on + strandat 1942.617 kb on - strandat 1942.617 kb on - strandat 1942.617 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea (N)
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1,940,291 + +0.1
1,940,291 + +1.6
1,940,294 + -0.5
1,940,439 + -0.4
1,940,439 + +0.1
1,942,616 + -1.1
1,942,616 + -0.9
1,942,617 - -1.0
1,942,617 - +0.2
1,942,617 - +0.5

Or see this region's nucleotide sequence