Strain Fitness in Escherichia coli BW25113 around b4702

Experiment: M63 no sulfur + 5 mM L-cys

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttreR and mgtL are separated by 184 nucleotidesmgtL and mgtA are separated by 140 nucleotides b4241: treR - trehalose repressor (NCBI), at 4,464,322 to 4,465,269 treR b4702: mgtL - regulatory leader peptide for mgtA (NCBI), at 4,465,454 to 4,465,507 mgtL b4242: mgtA - magnesium transporter (NCBI), at 4,465,648 to 4,468,344 mgtA Position (kb) 4465 4466Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 4464.476 kb on - strand, within treRat 4464.545 kb on - strand, within treRat 4464.556 kb on + strandat 4464.609 kb on - strand, within treRat 4464.650 kb on + strand, within treRat 4464.651 kb on + strand, within treRat 4464.662 kb on + strand, within treRat 4464.662 kb on + strand, within treRat 4464.667 kb on - strand, within treRat 4464.713 kb on - strand, within treRat 4464.713 kb on - strand, within treRat 4464.748 kb on + strand, within treRat 4464.748 kb on + strandat 4464.754 kb on + strand, within treRat 4464.754 kb on + strand, within treRat 4464.762 kb on + strand, within treRat 4464.762 kb on + strand, within treRat 4464.782 kb on - strand, within treRat 4464.794 kb on - strand, within treRat 4464.795 kb on - strand, within treRat 4464.795 kb on - strand, within treRat 4464.796 kb on + strand, within treRat 4464.816 kb on + strand, within treRat 4464.816 kb on + strand, within treRat 4464.845 kb on + strand, within treRat 4464.851 kb on + strand, within treRat 4464.851 kb on + strand, within treRat 4464.853 kb on + strand, within treRat 4464.885 kb on - strand, within treRat 4464.898 kb on - strand, within treRat 4464.898 kb on - strand, within treRat 4464.900 kb on + strand, within treRat 4464.900 kb on + strand, within treRat 4464.900 kb on + strand, within treRat 4464.908 kb on - strand, within treRat 4464.908 kb on - strand, within treRat 4464.908 kb on - strand, within treRat 4464.988 kb on + strand, within treRat 4464.988 kb on + strand, within treRat 4464.995 kb on - strand, within treRat 4464.995 kb on - strand, within treRat 4464.996 kb on - strand, within treRat 4464.996 kb on - strand, within treRat 4465.015 kb on + strand, within treRat 4465.016 kb on - strand, within treRat 4465.018 kb on - strand, within treRat 4465.058 kb on - strand, within treRat 4465.060 kb on + strand, within treRat 4465.080 kb on + strand, within treRat 4465.088 kb on - strand, within treRat 4465.105 kb on - strand, within treRat 4465.120 kb on - strand, within treRat 4465.120 kb on - strand, within treRat 4465.166 kb on - strand, within treRat 4465.166 kb on - strand, within treRat 4465.183 kb on + strandat 4465.183 kb on + strandat 4465.192 kb on + strandat 4465.192 kb on + strandat 4465.200 kb on - strandat 4465.200 kb on - strandat 4465.209 kb on + strandat 4465.217 kb on - strandat 4465.226 kb on + strandat 4465.226 kb on - strandat 4465.228 kb on + strandat 4465.236 kb on - strandat 4465.236 kb on - strandat 4465.236 kb on - strandat 4465.236 kb on - strandat 4465.276 kb on + strandat 4465.276 kb on - strandat 4465.276 kb on - strandat 4465.286 kb on + strandat 4465.299 kb on - strandat 4465.305 kb on + strandat 4465.305 kb on + strandat 4465.309 kb on + strandat 4465.313 kb on + strandat 4465.313 kb on + strandat 4465.316 kb on + strandat 4465.317 kb on - strandat 4465.317 kb on - strandat 4465.326 kb on + strandat 4465.326 kb on + strandat 4465.331 kb on + strandat 4465.331 kb on + strandat 4465.333 kb on + strandat 4465.339 kb on + strandat 4465.339 kb on + strandat 4465.371 kb on + strandat 4465.372 kb on + strandat 4465.377 kb on + strandat 4465.379 kb on - strandat 4465.379 kb on - strandat 4465.379 kb on - strandat 4465.383 kb on + strandat 4465.432 kb on + strandat 4465.432 kb on + strandat 4465.449 kb on + strandat 4465.449 kb on + strandat 4465.452 kb on + strandat 4465.452 kb on + strandat 4465.452 kb on + strandat 4465.453 kb on + strandat 4465.453 kb on + strandat 4465.456 kb on - strandat 4465.457 kb on - strandat 4465.457 kb on - strandat 4465.467 kb on - strand, within mgtLat 4465.467 kb on - strand, within mgtLat 4465.480 kb on - strand, within mgtLat 4465.480 kb on - strand, within mgtLat 4465.486 kb on - strand, within mgtLat 4465.486 kb on - strand, within mgtLat 4465.523 kb on + strandat 4465.525 kb on + strandat 4465.525 kb on + strandat 4465.525 kb on + strandat 4465.531 kb on + strandat 4465.531 kb on + strandat 4465.533 kb on + strandat 4465.543 kb on - strandat 4465.543 kb on - strandat 4465.543 kb on - strandat 4465.543 kb on - strandat 4465.543 kb on - strandat 4465.567 kb on - strandat 4465.567 kb on - strandat 4465.579 kb on - strandat 4465.619 kb on - strandat 4465.621 kb on + strandat 4465.621 kb on + strandat 4465.621 kb on + strandat 4465.629 kb on - strandat 4465.629 kb on - strandat 4465.631 kb on + strandat 4465.631 kb on + strandat 4465.631 kb on + strandat 4465.631 kb on + strandat 4465.631 kb on + strandat 4465.642 kb on + strandat 4465.644 kb on - strandat 4465.652 kb on - strandat 4465.652 kb on - strandat 4465.694 kb on + strandat 4465.694 kb on + strandat 4465.706 kb on - strandat 4465.706 kb on - strandat 4465.707 kb on - strandat 4465.728 kb on + strandat 4465.743 kb on - strandat 4465.745 kb on - strandat 4465.745 kb on - strandat 4465.755 kb on + strandat 4465.762 kb on + strandat 4465.763 kb on - strandat 4465.763 kb on - strandat 4465.763 kb on - strandat 4465.796 kb on + strandat 4465.814 kb on + strandat 4465.816 kb on + strandat 4465.816 kb on + strandat 4465.832 kb on - strandat 4465.834 kb on - strandat 4465.835 kb on + strandat 4465.842 kb on - strandat 4465.859 kb on - strandat 4465.859 kb on - strandat 4465.859 kb on - strandat 4465.859 kb on - strandat 4465.859 kb on - strandat 4465.863 kb on - strandat 4465.905 kb on - strandat 4465.911 kb on + strandat 4465.919 kb on - strand, within mgtAat 4465.921 kb on + strand, within mgtAat 4465.921 kb on + strand, within mgtAat 4465.921 kb on + strand, within mgtAat 4465.922 kb on + strand, within mgtAat 4465.922 kb on + strand, within mgtAat 4465.922 kb on + strand, within mgtAat 4465.930 kb on - strand, within mgtAat 4465.932 kb on + strand, within mgtAat 4465.932 kb on + strand, within mgtAat 4465.934 kb on + strand, within mgtAat 4465.942 kb on - strand, within mgtAat 4465.942 kb on - strand, within mgtAat 4465.969 kb on - strand, within mgtAat 4465.986 kb on - strand, within mgtAat 4465.986 kb on - strand, within mgtAat 4466.033 kb on + strand, within mgtAat 4466.036 kb on + strand, within mgtAat 4466.042 kb on - strand, within mgtAat 4466.042 kb on - strand, within mgtAat 4466.067 kb on + strand, within mgtAat 4466.067 kb on - strand, within mgtAat 4466.067 kb on - strand, within mgtAat 4466.068 kb on + strand, within mgtAat 4466.072 kb on + strand, within mgtAat 4466.072 kb on + strand, within mgtAat 4466.076 kb on - strand, within mgtAat 4466.076 kb on - strand, within mgtAat 4466.078 kb on - strand, within mgtAat 4466.080 kb on - strand, within mgtAat 4466.085 kb on - strand, within mgtAat 4466.090 kb on + strand, within mgtAat 4466.092 kb on - strand, within mgtAat 4466.092 kb on - strand, within mgtAat 4466.097 kb on - strand, within mgtAat 4466.103 kb on + strand, within mgtAat 4466.114 kb on + strand, within mgtAat 4466.114 kb on + strand, within mgtAat 4466.114 kb on - strand, within mgtAat 4466.127 kb on + strand, within mgtAat 4466.252 kb on + strand, within mgtAat 4466.262 kb on + strand, within mgtAat 4466.262 kb on + strand, within mgtAat 4466.262 kb on + strand, within mgtAat 4466.292 kb on + strand, within mgtAat 4466.292 kb on + strand, within mgtAat 4466.300 kb on - strand, within mgtAat 4466.300 kb on - strand, within mgtAat 4466.300 kb on - strand, within mgtAat 4466.352 kb on + strand, within mgtAat 4466.360 kb on - strand, within mgtAat 4466.378 kb on + strand, within mgtAat 4466.378 kb on + strand, within mgtAat 4466.393 kb on + strand, within mgtAat 4466.402 kb on + strand, within mgtAat 4466.438 kb on - strand, within mgtAat 4466.442 kb on - strand, within mgtAat 4466.442 kb on - strand, within mgtA

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Per-strain Table

Position Strand Gene LocusTag Fraction M63 no sulfur + 5 mM L-cys
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4,464,476 - treR b4241 0.16 -0.6
4,464,545 - treR b4241 0.24 +0.2
4,464,556 + +3.4
4,464,609 - treR b4241 0.30 +0.2
4,464,650 + treR b4241 0.35 -0.2
4,464,651 + treR b4241 0.35 +0.9
4,464,662 + treR b4241 0.36 -0.0
4,464,662 + treR b4241 0.36 -0.1
4,464,667 - treR b4241 0.36 -0.4
4,464,713 - treR b4241 0.41 -0.4
4,464,713 - treR b4241 0.41 +0.3
4,464,748 + treR b4241 0.45 -0.0
4,464,748 + -1.2
4,464,754 + treR b4241 0.46 -0.0
4,464,754 + treR b4241 0.46 +0.3
4,464,762 + treR b4241 0.46 +0.5
4,464,762 + treR b4241 0.46 +0.2
4,464,782 - treR b4241 0.49 +0.1
4,464,794 - treR b4241 0.50 +0.8
4,464,795 - treR b4241 0.50 -0.2
4,464,795 - treR b4241 0.50 +0.5
4,464,796 + treR b4241 0.50 -0.0
4,464,816 + treR b4241 0.52 +0.5
4,464,816 + treR b4241 0.52 -0.3
4,464,845 + treR b4241 0.55 -0.4
4,464,851 + treR b4241 0.56 +0.4
4,464,851 + treR b4241 0.56 -0.7
4,464,853 + treR b4241 0.56 +0.2
4,464,885 - treR b4241 0.59 -0.4
4,464,898 - treR b4241 0.61 -0.6
4,464,898 - treR b4241 0.61 -0.1
4,464,900 + treR b4241 0.61 -0.6
4,464,900 + treR b4241 0.61 +0.1
4,464,900 + treR b4241 0.61 -0.5
4,464,908 - treR b4241 0.62 +0.3
4,464,908 - treR b4241 0.62 -0.4
4,464,908 - treR b4241 0.62 +0.0
4,464,988 + treR b4241 0.70 -0.0
4,464,988 + treR b4241 0.70 -0.1
4,464,995 - treR b4241 0.71 +0.3
4,464,995 - treR b4241 0.71 -1.0
4,464,996 - treR b4241 0.71 -0.2
4,464,996 - treR b4241 0.71 -0.0
4,465,015 + treR b4241 0.73 -0.6
4,465,016 - treR b4241 0.73 -0.7
4,465,018 - treR b4241 0.73 -1.0
4,465,058 - treR b4241 0.78 -0.6
4,465,060 + treR b4241 0.78 -0.9
4,465,080 + treR b4241 0.80 -0.1
4,465,088 - treR b4241 0.81 -0.9
4,465,105 - treR b4241 0.83 -0.4
4,465,120 - treR b4241 0.84 -0.3
4,465,120 - treR b4241 0.84 -0.8
4,465,166 - treR b4241 0.89 -1.8
4,465,166 - treR b4241 0.89 -2.1
4,465,183 + -0.4
4,465,183 + -3.7
4,465,192 + -0.3
4,465,192 + -1.2
4,465,200 - -2.4
4,465,200 - -2.1
4,465,209 + -0.8
4,465,217 - -1.4
4,465,226 + -2.0
4,465,226 - -2.2
4,465,228 + -0.9
4,465,236 - -0.9
4,465,236 - -3.0
4,465,236 - -2.2
4,465,236 - -2.6
4,465,276 + -0.3
4,465,276 - -3.0
4,465,276 - -2.8
4,465,286 + +0.4
4,465,299 - -5.6
4,465,305 + -1.3
4,465,305 + -1.3
4,465,309 + -1.6
4,465,313 + -3.7
4,465,313 + -1.2
4,465,316 + -0.7
4,465,317 - -1.9
4,465,317 - -0.8
4,465,326 + -0.4
4,465,326 + -2.2
4,465,331 + -0.5
4,465,331 + -0.7
4,465,333 + -1.2
4,465,339 + +0.4
4,465,339 + -0.6
4,465,371 + -2.7
4,465,372 + -4.9
4,465,377 + -3.1
4,465,379 - -3.1
4,465,379 - -4.3
4,465,379 - -3.4
4,465,383 + -4.4
4,465,432 + -1.8
4,465,432 + -4.4
4,465,449 + -0.6
4,465,449 + -0.4
4,465,452 + -2.9
4,465,452 + +0.0
4,465,452 + -0.4
4,465,453 + -4.8
4,465,453 + -1.1
4,465,456 - -6.3
4,465,457 - -3.8
4,465,457 - -3.2
4,465,467 - mgtL b4702 0.24 -3.0
4,465,467 - mgtL b4702 0.24 -3.5
4,465,480 - mgtL b4702 0.48 -4.2
4,465,480 - mgtL b4702 0.48 -6.3
4,465,486 - mgtL b4702 0.59 -3.9
4,465,486 - mgtL b4702 0.59 -4.8
4,465,523 + -4.1
4,465,525 + -1.2
4,465,525 + -1.8
4,465,525 + +0.0
4,465,531 + -3.1
4,465,531 + -0.8
4,465,533 + +0.1
4,465,543 - -5.0
4,465,543 - -4.5
4,465,543 - -5.2
4,465,543 - -4.4
4,465,543 - -5.6
4,465,567 - -4.4
4,465,567 - -3.1
4,465,579 - -4.2
4,465,619 - -5.0
4,465,621 + -1.4
4,465,621 + -1.6
4,465,621 + -0.8
4,465,629 - -2.8
4,465,629 - -3.8
4,465,631 + -5.7
4,465,631 + -2.5
4,465,631 + -4.0
4,465,631 + -4.4
4,465,631 + -3.7
4,465,642 + +1.1
4,465,644 - -5.1
4,465,652 - -4.4
4,465,652 - -3.1
4,465,694 + -4.7
4,465,694 + -4.2
4,465,706 - -4.3
4,465,706 - -2.9
4,465,707 - -4.4
4,465,728 + -2.8
4,465,743 - -4.8
4,465,745 - -3.6
4,465,745 - -3.6
4,465,755 + -5.3
4,465,762 + -4.8
4,465,763 - -4.7
4,465,763 - -2.9
4,465,763 - -2.4
4,465,796 + -2.4
4,465,814 + -5.1
4,465,816 + -4.5
4,465,816 + -4.4
4,465,832 - -3.9
4,465,834 - -2.6
4,465,835 + -6.1
4,465,842 - -4.8
4,465,859 - -4.9
4,465,859 - -6.1
4,465,859 - -5.7
4,465,859 - -4.2
4,465,859 - -4.9
4,465,863 - -5.1
4,465,905 - -5.9
4,465,911 + -5.3
4,465,919 - mgtA b4242 0.10 -5.3
4,465,921 + mgtA b4242 0.10 -6.3
4,465,921 + mgtA b4242 0.10 -4.3
4,465,921 + mgtA b4242 0.10 -4.5
4,465,922 + mgtA b4242 0.10 -3.4
4,465,922 + mgtA b4242 0.10 -5.6
4,465,922 + mgtA b4242 0.10 -3.7
4,465,930 - mgtA b4242 0.10 -5.4
4,465,932 + mgtA b4242 0.11 -4.0
4,465,932 + mgtA b4242 0.11 -4.7
4,465,934 + mgtA b4242 0.11 -4.9
4,465,942 - mgtA b4242 0.11 -3.8
4,465,942 - mgtA b4242 0.11 -3.2
4,465,969 - mgtA b4242 0.12 -2.9
4,465,986 - mgtA b4242 0.13 -5.3
4,465,986 - mgtA b4242 0.13 -5.2
4,466,033 + mgtA b4242 0.14 -5.2
4,466,036 + mgtA b4242 0.14 -5.0
4,466,042 - mgtA b4242 0.15 -4.2
4,466,042 - mgtA b4242 0.15 -4.9
4,466,067 + mgtA b4242 0.16 -4.5
4,466,067 - mgtA b4242 0.16 -3.8
4,466,067 - mgtA b4242 0.16 -4.8
4,466,068 + mgtA b4242 0.16 -5.7
4,466,072 + mgtA b4242 0.16 -3.6
4,466,072 + mgtA b4242 0.16 -4.6
4,466,076 - mgtA b4242 0.16 -3.2
4,466,076 - mgtA b4242 0.16 -6.3
4,466,078 - mgtA b4242 0.16 -4.0
4,466,080 - mgtA b4242 0.16 -4.8
4,466,085 - mgtA b4242 0.16 -5.9
4,466,090 + mgtA b4242 0.16 -6.1
4,466,092 - mgtA b4242 0.16 -4.7
4,466,092 - mgtA b4242 0.16 -4.9
4,466,097 - mgtA b4242 0.17 -3.9
4,466,103 + mgtA b4242 0.17 -4.0
4,466,114 + mgtA b4242 0.17 -5.6
4,466,114 + mgtA b4242 0.17 -3.5
4,466,114 - mgtA b4242 0.17 -3.2
4,466,127 + mgtA b4242 0.18 -3.1
4,466,252 + mgtA b4242 0.22 -5.8
4,466,262 + mgtA b4242 0.23 -5.4
4,466,262 + mgtA b4242 0.23 -3.6
4,466,262 + mgtA b4242 0.23 -5.3
4,466,292 + mgtA b4242 0.24 -4.9
4,466,292 + mgtA b4242 0.24 -4.7
4,466,300 - mgtA b4242 0.24 -4.6
4,466,300 - mgtA b4242 0.24 -5.9
4,466,300 - mgtA b4242 0.24 -4.4
4,466,352 + mgtA b4242 0.26 -4.8
4,466,360 - mgtA b4242 0.26 -4.5
4,466,378 + mgtA b4242 0.27 -3.6
4,466,378 + mgtA b4242 0.27 -4.4
4,466,393 + mgtA b4242 0.28 -4.4
4,466,402 + mgtA b4242 0.28 -6.0
4,466,438 - mgtA b4242 0.29 -4.4
4,466,442 - mgtA b4242 0.29 -4.3
4,466,442 - mgtA b4242 0.29 -4.0

Or see this region's nucleotide sequence