Strain Fitness in Pseudomonas simiae WCS417 around PS417_23530

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23525 and PS417_23530 overlap by 32 nucleotidesPS417_23530 and PS417_23535 are separated by 221 nucleotidesPS417_23535 and PS417_23540 are separated by 101 nucleotides PS417_23525: PS417_23525 - glycoside hydrolase, at 5,089,695 to 5,090,897 _23525 PS417_23530: PS417_23530 - 1,2-oxophytodienoate reductase, at 5,090,866 to 5,091,969 _23530 PS417_23535: PS417_23535 - glutathione peroxidase, at 5,092,191 to 5,092,673 _23535 PS417_23540: PS417_23540 - CreA, at 5,092,775 to 5,093,239 _23540 Position (kb) 5090 5091 5092Strain fitness (log2 ratio) -2 -1 0 1at 5089.981 kb on - strand, within PS417_23525at 5089.981 kb on - strand, within PS417_23525at 5090.080 kb on - strand, within PS417_23525at 5090.080 kb on - strand, within PS417_23525at 5090.127 kb on + strand, within PS417_23525at 5090.128 kb on - strand, within PS417_23525at 5090.145 kb on - strand, within PS417_23525at 5090.300 kb on - strand, within PS417_23525at 5090.326 kb on - strand, within PS417_23525at 5090.326 kb on - strand, within PS417_23525at 5090.397 kb on + strand, within PS417_23525at 5090.642 kb on + strand, within PS417_23525at 5090.643 kb on - strand, within PS417_23525at 5090.656 kb on - strand, within PS417_23525at 5090.665 kb on + strand, within PS417_23525at 5090.666 kb on - strand, within PS417_23525at 5090.666 kb on - strand, within PS417_23525at 5090.867 kb on + strandat 5090.867 kb on + strandat 5090.868 kb on - strandat 5090.971 kb on + strandat 5091.278 kb on + strand, within PS417_23530at 5091.278 kb on + strand, within PS417_23530at 5091.278 kb on + strand, within PS417_23530at 5091.278 kb on + strand, within PS417_23530at 5091.279 kb on - strand, within PS417_23530at 5091.279 kb on - strand, within PS417_23530at 5091.449 kb on + strand, within PS417_23530at 5091.603 kb on - strand, within PS417_23530at 5091.694 kb on + strand, within PS417_23530at 5091.842 kb on + strand, within PS417_23530at 5092.038 kb on + strandat 5092.039 kb on - strandat 5092.140 kb on + strandat 5092.176 kb on + strandat 5092.176 kb on + strandat 5092.188 kb on + strandat 5092.188 kb on + strandat 5092.189 kb on - strandat 5092.519 kb on + strand, within PS417_23535at 5092.519 kb on + strand, within PS417_23535at 5092.520 kb on - strand, within PS417_23535at 5092.520 kb on - strand, within PS417_23535at 5092.520 kb on - strandat 5092.520 kb on - strand, within PS417_23535at 5092.550 kb on - strand, within PS417_23535at 5092.722 kb on + strandat 5092.722 kb on + strandat 5092.722 kb on + strandat 5092.745 kb on + strandat 5092.746 kb on - strandat 5092.854 kb on + strand, within PS417_23540at 5092.854 kb on + strand, within PS417_23540at 5092.855 kb on - strand, within PS417_23540at 5092.855 kb on - strand, within PS417_23540at 5092.857 kb on - strand, within PS417_23540at 5092.857 kb on - strand, within PS417_23540

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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5,089,981 - PS417_23525 0.24 +0.0
5,089,981 - PS417_23525 0.24 -0.2
5,090,080 - PS417_23525 0.32 -0.4
5,090,080 - PS417_23525 0.32 +0.2
5,090,127 + PS417_23525 0.36 -0.5
5,090,128 - PS417_23525 0.36 -0.1
5,090,145 - PS417_23525 0.37 +0.2
5,090,300 - PS417_23525 0.50 -0.4
5,090,326 - PS417_23525 0.52 -1.4
5,090,326 - PS417_23525 0.52 +0.0
5,090,397 + PS417_23525 0.58 +0.1
5,090,642 + PS417_23525 0.79 -0.1
5,090,643 - PS417_23525 0.79 -0.4
5,090,656 - PS417_23525 0.80 -1.0
5,090,665 + PS417_23525 0.81 -0.1
5,090,666 - PS417_23525 0.81 +0.2
5,090,666 - PS417_23525 0.81 -0.4
5,090,867 + +1.2
5,090,867 + +0.2
5,090,868 - +0.9
5,090,971 + -0.2
5,091,278 + PS417_23530 0.37 -0.3
5,091,278 + PS417_23530 0.37 +0.0
5,091,278 + PS417_23530 0.37 -1.4
5,091,278 + PS417_23530 0.37 -0.8
5,091,279 - PS417_23530 0.37 -0.2
5,091,279 - PS417_23530 0.37 -0.6
5,091,449 + PS417_23530 0.53 -1.4
5,091,603 - PS417_23530 0.67 -1.3
5,091,694 + PS417_23530 0.75 -0.1
5,091,842 + PS417_23530 0.88 -0.2
5,092,038 + +0.9
5,092,039 - +0.3
5,092,140 + +0.9
5,092,176 + +0.2
5,092,176 + +0.0
5,092,188 + -0.6
5,092,188 + -0.0
5,092,189 - +0.4
5,092,519 + PS417_23535 0.68 +1.6
5,092,519 + PS417_23535 0.68 -0.3
5,092,520 - PS417_23535 0.68 +0.8
5,092,520 - PS417_23535 0.68 -0.5
5,092,520 - -2.0
5,092,520 - PS417_23535 0.68 -0.4
5,092,550 - PS417_23535 0.74 +0.1
5,092,722 + +0.3
5,092,722 + -0.4
5,092,722 + -0.2
5,092,745 + -0.1
5,092,746 - +1.0
5,092,854 + PS417_23540 0.17 +0.4
5,092,854 + PS417_23540 0.17 +0.3
5,092,855 - PS417_23540 0.17 +0.3
5,092,855 - PS417_23540 0.17 +0.1
5,092,857 - PS417_23540 0.18 +0.4
5,092,857 - PS417_23540 0.18 +0.0

Or see this region's nucleotide sequence