Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_07190 and PS417_07195 are separated by 282 nucleotides PS417_07195 and PS417_07200 are separated by 50 nucleotides
PS417_07190: PS417_07190 - MFS transporter, at 1,587,205 to 1,588,431
_07190
PS417_07195: PS417_07195 - hypothetical protein, at 1,588,714 to 1,588,968
_07195
PS417_07200: PS417_07200 - LysR family transcriptional regulator, at 1,589,019 to 1,589,984
_07200
Position (kb)
1588
1589 Strain fitness (log2 ratio)
-2
-1
0
1 at 1587.916 kb on + strand, within PS417_07190 at 1587.943 kb on + strand at 1588.389 kb on + strand at 1588.389 kb on + strand at 1588.389 kb on + strand at 1588.389 kb on + strand at 1588.390 kb on - strand at 1588.390 kb on - strand at 1588.390 kb on - strand at 1588.486 kb on - strand at 1588.486 kb on - strand at 1588.498 kb on + strand at 1588.541 kb on + strand at 1588.541 kb on + strand at 1588.541 kb on + strand at 1588.542 kb on - strand at 1588.624 kb on + strand at 1588.657 kb on + strand at 1588.660 kb on + strand at 1588.660 kb on + strand at 1588.748 kb on + strand, within PS417_07195 at 1588.748 kb on + strand, within PS417_07195 at 1588.749 kb on - strand, within PS417_07195 at 1588.900 kb on + strand, within PS417_07195 at 1588.900 kb on + strand, within PS417_07195 at 1588.901 kb on - strand, within PS417_07195 at 1588.901 kb on - strand, within PS417_07195 at 1588.970 kb on + strand at 1589.031 kb on - strand at 1589.078 kb on + strand at 1589.124 kb on + strand, within PS417_07200 at 1589.124 kb on + strand, within PS417_07200 at 1589.124 kb on + strand, within PS417_07200 at 1589.125 kb on - strand, within PS417_07200 at 1589.125 kb on - strand, within PS417_07200 at 1589.125 kb on - strand, within PS417_07200 at 1589.125 kb on - strand, within PS417_07200 at 1589.614 kb on + strand, within PS417_07200 at 1589.615 kb on - strand, within PS417_07200 at 1589.703 kb on - strand, within PS417_07200 at 1589.725 kb on + strand, within PS417_07200 at 1589.725 kb on + strand, within PS417_07200 at 1589.726 kb on - strand, within PS417_07200 at 1589.726 kb on - strand, within PS417_07200 at 1589.726 kb on - strand, within PS417_07200 at 1589.726 kb on - strand, within PS417_07200
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 1,587,916 + PS417_07190 0.58 +0.3 1,587,943 + -0.1 1,588,389 + -0.3 1,588,389 + -1.8 1,588,389 + +0.3 1,588,389 + -1.5 1,588,390 - +0.4 1,588,390 - -0.1 1,588,390 - -1.1 1,588,486 - +1.0 1,588,486 - +0.1 1,588,498 + +0.4 1,588,541 + +1.1 1,588,541 + -0.4 1,588,541 + -0.4 1,588,542 - -0.1 1,588,624 + -0.3 1,588,657 + +0.6 1,588,660 + +0.1 1,588,660 + -0.1 1,588,748 + PS417_07195 0.13 -0.3 1,588,748 + PS417_07195 0.13 -0.3 1,588,749 - PS417_07195 0.14 -0.3 1,588,900 + PS417_07195 0.73 -0.9 1,588,900 + PS417_07195 0.73 -0.4 1,588,901 - PS417_07195 0.73 -0.8 1,588,901 - PS417_07195 0.73 -0.1 1,588,970 + +0.9 1,589,031 - -1.3 1,589,078 + +0.2 1,589,124 + PS417_07200 0.11 +0.6 1,589,124 + PS417_07200 0.11 +0.6 1,589,124 + PS417_07200 0.11 -0.7 1,589,125 - PS417_07200 0.11 -0.1 1,589,125 - PS417_07200 0.11 -0.4 1,589,125 - PS417_07200 0.11 +0.5 1,589,125 - PS417_07200 0.11 +0.4 1,589,614 + PS417_07200 0.62 -1.3 1,589,615 - PS417_07200 0.62 -0.6 1,589,703 - PS417_07200 0.71 +0.4 1,589,725 + PS417_07200 0.73 +0.4 1,589,725 + PS417_07200 0.73 -0.1 1,589,726 - PS417_07200 0.73 -0.4 1,589,726 - PS417_07200 0.73 -0.0 1,589,726 - PS417_07200 0.73 -0.2 1,589,726 - PS417_07200 0.73 +0.5
Or see this region's nucleotide sequence