Strain Fitness in Pseudomonas simiae WCS417 around PS417_07195

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_07190 and PS417_07195 are separated by 282 nucleotidesPS417_07195 and PS417_07200 are separated by 50 nucleotides PS417_07190: PS417_07190 - MFS transporter, at 1,587,205 to 1,588,431 _07190 PS417_07195: PS417_07195 - hypothetical protein, at 1,588,714 to 1,588,968 _07195 PS417_07200: PS417_07200 - LysR family transcriptional regulator, at 1,589,019 to 1,589,984 _07200 Position (kb) 1588 1589Strain fitness (log2 ratio) -2 -1 0 1at 1587.916 kb on + strand, within PS417_07190at 1587.943 kb on + strandat 1588.389 kb on + strandat 1588.389 kb on + strandat 1588.389 kb on + strandat 1588.389 kb on + strandat 1588.390 kb on - strandat 1588.390 kb on - strandat 1588.390 kb on - strandat 1588.486 kb on - strandat 1588.486 kb on - strandat 1588.498 kb on + strandat 1588.541 kb on + strandat 1588.541 kb on + strandat 1588.541 kb on + strandat 1588.542 kb on - strandat 1588.624 kb on + strandat 1588.657 kb on + strandat 1588.660 kb on + strandat 1588.660 kb on + strandat 1588.748 kb on + strand, within PS417_07195at 1588.748 kb on + strand, within PS417_07195at 1588.749 kb on - strand, within PS417_07195at 1588.900 kb on + strand, within PS417_07195at 1588.900 kb on + strand, within PS417_07195at 1588.901 kb on - strand, within PS417_07195at 1588.901 kb on - strand, within PS417_07195at 1588.970 kb on + strandat 1589.031 kb on - strandat 1589.078 kb on + strandat 1589.124 kb on + strand, within PS417_07200at 1589.124 kb on + strand, within PS417_07200at 1589.124 kb on + strand, within PS417_07200at 1589.125 kb on - strand, within PS417_07200at 1589.125 kb on - strand, within PS417_07200at 1589.125 kb on - strand, within PS417_07200at 1589.125 kb on - strand, within PS417_07200at 1589.614 kb on + strand, within PS417_07200at 1589.615 kb on - strand, within PS417_07200at 1589.703 kb on - strand, within PS417_07200at 1589.725 kb on + strand, within PS417_07200at 1589.725 kb on + strand, within PS417_07200at 1589.726 kb on - strand, within PS417_07200at 1589.726 kb on - strand, within PS417_07200at 1589.726 kb on - strand, within PS417_07200at 1589.726 kb on - strand, within PS417_07200

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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1,587,916 + PS417_07190 0.58 +0.3
1,587,943 + -0.1
1,588,389 + -0.3
1,588,389 + -1.8
1,588,389 + +0.3
1,588,389 + -1.5
1,588,390 - +0.4
1,588,390 - -0.1
1,588,390 - -1.1
1,588,486 - +1.0
1,588,486 - +0.1
1,588,498 + +0.4
1,588,541 + +1.1
1,588,541 + -0.4
1,588,541 + -0.4
1,588,542 - -0.1
1,588,624 + -0.3
1,588,657 + +0.6
1,588,660 + +0.1
1,588,660 + -0.1
1,588,748 + PS417_07195 0.13 -0.3
1,588,748 + PS417_07195 0.13 -0.3
1,588,749 - PS417_07195 0.14 -0.3
1,588,900 + PS417_07195 0.73 -0.9
1,588,900 + PS417_07195 0.73 -0.4
1,588,901 - PS417_07195 0.73 -0.8
1,588,901 - PS417_07195 0.73 -0.1
1,588,970 + +0.9
1,589,031 - -1.3
1,589,078 + +0.2
1,589,124 + PS417_07200 0.11 +0.6
1,589,124 + PS417_07200 0.11 +0.6
1,589,124 + PS417_07200 0.11 -0.7
1,589,125 - PS417_07200 0.11 -0.1
1,589,125 - PS417_07200 0.11 -0.4
1,589,125 - PS417_07200 0.11 +0.5
1,589,125 - PS417_07200 0.11 +0.4
1,589,614 + PS417_07200 0.62 -1.3
1,589,615 - PS417_07200 0.62 -0.6
1,589,703 - PS417_07200 0.71 +0.4
1,589,725 + PS417_07200 0.73 +0.4
1,589,725 + PS417_07200 0.73 -0.1
1,589,726 - PS417_07200 0.73 -0.4
1,589,726 - PS417_07200 0.73 -0.0
1,589,726 - PS417_07200 0.73 -0.2
1,589,726 - PS417_07200 0.73 +0.5

Or see this region's nucleotide sequence