Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23065 and PS417_23070 are separated by 340 nucleotides PS417_23070 and PS417_23075 are separated by 80 nucleotides
PS417_23065: PS417_23065 - hypothetical protein, at 4,999,605 to 5,000,162
_23065
PS417_23070: PS417_23070 - GMP synthase, at 5,000,503 to 5,002,080
_23070
PS417_23075: PS417_23075 - inosine-5-monophosphate dehydrogenase, at 5,002,161 to 5,003,630
_23075
Position (kb) 5000
5001
5002
5003 Strain fitness (log2 ratio) -1
0
1
2 at 4999.672 kb on + strand, within PS417_23065 at 4999.790 kb on + strand, within PS417_23065 at 4999.862 kb on + strand, within PS417_23065 at 4999.862 kb on + strand, within PS417_23065 at 4999.862 kb on + strand, within PS417_23065 at 4999.862 kb on + strand, within PS417_23065 at 4999.863 kb on - strand, within PS417_23065 at 4999.878 kb on - strand, within PS417_23065 at 4999.901 kb on - strand at 4999.921 kb on + strand, within PS417_23065 at 4999.921 kb on + strand, within PS417_23065 at 4999.922 kb on - strand, within PS417_23065 at 4999.922 kb on - strand, within PS417_23065 at 4999.985 kb on - strand, within PS417_23065 at 4999.985 kb on - strand, within PS417_23065 at 5000.014 kb on - strand, within PS417_23065 at 5000.014 kb on - strand, within PS417_23065 at 5000.078 kb on + strand, within PS417_23065 at 5000.117 kb on + strand at 5000.227 kb on - strand at 5000.382 kb on + strand at 5000.383 kb on - strand at 5000.385 kb on - strand at 5000.387 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 4,999,672 + PS417_23065 0.12 -0.5 4,999,790 + PS417_23065 0.33 +0.8 4,999,862 + PS417_23065 0.46 +0.4 4,999,862 + PS417_23065 0.46 +0.0 4,999,862 + PS417_23065 0.46 +2.0 4,999,862 + PS417_23065 0.46 -0.6 4,999,863 - PS417_23065 0.46 -0.0 4,999,878 - PS417_23065 0.49 -0.3 4,999,901 - +1.2 4,999,921 + PS417_23065 0.57 +0.1 4,999,921 + PS417_23065 0.57 -0.1 4,999,922 - PS417_23065 0.57 +1.1 4,999,922 - PS417_23065 0.57 -0.0 4,999,985 - PS417_23065 0.68 -0.4 4,999,985 - PS417_23065 0.68 +1.2 5,000,014 - PS417_23065 0.73 +0.1 5,000,014 - PS417_23065 0.73 -0.1 5,000,078 + PS417_23065 0.85 -0.2 5,000,117 + +0.0 5,000,227 - -0.1 5,000,382 + +0.1 5,000,383 - -0.0 5,000,385 - -0.5 5,000,387 - +0.8
Or see this region's nucleotide sequence