Strain Fitness in Pseudomonas simiae WCS417 around PS417_02000

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01990 and PS417_01995 are separated by 98 nucleotidesPS417_01995 and PS417_02000 overlap by 21 nucleotidesPS417_02000 and PS417_02005 are separated by 32 nucleotides PS417_01990: PS417_01990 - cell division protein, at 441,508 to 443,079 _01990 PS417_01995: PS417_01995 - hypothetical protein, at 443,178 to 443,453 _01995 PS417_02000: PS417_02000 - glutamate synthase, at 443,433 to 447,878 _02000 PS417_02005: PS417_02005 - glutamate synthase, at 447,911 to 449,329 _02005 Position (kb) 443 444 445 446 447 448Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 442.901 kb on - strand, within PS417_01990at 442.951 kb on + strandat 443.149 kb on + strandat 443.149 kb on + strandat 443.149 kb on + strandat 443.236 kb on + strand, within PS417_01995at 443.255 kb on + strand, within PS417_01995at 443.317 kb on - strand, within PS417_01995at 443.317 kb on - strand, within PS417_01995at 443.520 kb on - strandat 443.686 kb on - strandat 443.916 kb on - strand, within PS417_02000at 443.964 kb on + strand, within PS417_02000at 443.997 kb on + strand, within PS417_02000at 443.998 kb on - strand, within PS417_02000at 443.998 kb on - strand, within PS417_02000at 443.998 kb on - strand, within PS417_02000at 443.999 kb on + strand, within PS417_02000at 444.037 kb on - strand, within PS417_02000at 444.105 kb on - strand, within PS417_02000at 444.412 kb on - strand, within PS417_02000at 444.577 kb on - strand, within PS417_02000at 444.702 kb on + strand, within PS417_02000at 444.777 kb on + strand, within PS417_02000at 444.778 kb on - strand, within PS417_02000at 444.778 kb on - strand, within PS417_02000at 444.801 kb on + strand, within PS417_02000at 444.802 kb on - strand, within PS417_02000at 444.813 kb on + strand, within PS417_02000at 444.814 kb on - strand, within PS417_02000at 444.814 kb on - strand, within PS417_02000at 444.814 kb on - strand, within PS417_02000at 445.176 kb on + strand, within PS417_02000at 445.515 kb on + strand, within PS417_02000at 445.516 kb on - strand, within PS417_02000at 445.803 kb on + strand, within PS417_02000at 445.881 kb on + strand, within PS417_02000at 445.882 kb on - strand, within PS417_02000at 446.190 kb on + strand, within PS417_02000at 446.190 kb on + strand, within PS417_02000at 446.190 kb on + strand, within PS417_02000at 446.352 kb on + strand, within PS417_02000at 446.352 kb on + strandat 446.353 kb on - strand, within PS417_02000at 446.353 kb on - strand, within PS417_02000at 446.740 kb on - strand, within PS417_02000at 446.853 kb on + strand, within PS417_02000at 447.141 kb on - strand, within PS417_02000at 447.297 kb on + strand, within PS417_02000at 447.298 kb on - strand, within PS417_02000at 447.298 kb on - strand, within PS417_02000at 447.381 kb on + strand, within PS417_02000at 447.423 kb on + strand, within PS417_02000at 447.537 kb on + strandat 447.615 kb on + strandat 447.616 kb on - strandat 447.739 kb on - strandat 447.796 kb on - strandat 447.796 kb on - strandat 447.908 kb on - strandat 447.908 kb on - strandat 447.929 kb on - strandat 448.013 kb on + strandat 448.014 kb on - strandat 448.014 kb on - strandat 448.014 kb on - strandat 448.292 kb on + strand, within PS417_02005at 448.292 kb on + strand, within PS417_02005at 448.292 kb on + strand, within PS417_02005at 448.292 kb on + strand, within PS417_02005at 448.292 kb on + strand, within PS417_02005at 448.292 kb on + strand, within PS417_02005at 448.292 kb on + strand, within PS417_02005at 448.293 kb on - strand, within PS417_02005at 448.512 kb on + strand, within PS417_02005at 448.614 kb on - strand, within PS417_02005at 448.614 kb on - strand, within PS417_02005at 448.643 kb on + strand, within PS417_02005at 448.644 kb on - strand, within PS417_02005at 448.644 kb on - strand, within PS417_02005at 448.644 kb on - strand, within PS417_02005at 448.644 kb on - strand, within PS417_02005at 448.649 kb on + strand, within PS417_02005at 448.650 kb on - strand, within PS417_02005at 448.650 kb on - strand, within PS417_02005at 448.691 kb on + strand, within PS417_02005at 448.692 kb on - strand, within PS417_02005

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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442,901 - PS417_01990 0.89 +0.8
442,951 + +0.2
443,149 + +0.5
443,149 + -0.0
443,149 + -0.4
443,236 + PS417_01995 0.21 -0.0
443,255 + PS417_01995 0.28 -1.1
443,317 - PS417_01995 0.50 -3.3
443,317 - PS417_01995 0.50 -1.1
443,520 - -2.8
443,686 - -2.3
443,916 - PS417_02000 0.11 -3.4
443,964 + PS417_02000 0.12 -2.4
443,997 + PS417_02000 0.13 -0.5
443,998 - PS417_02000 0.13 -5.1
443,998 - PS417_02000 0.13 -3.9
443,998 - PS417_02000 0.13 -3.0
443,999 + PS417_02000 0.13 -4.7
444,037 - PS417_02000 0.14 -2.6
444,105 - PS417_02000 0.15 -5.9
444,412 - PS417_02000 0.22 -6.1
444,577 - PS417_02000 0.26 -2.5
444,702 + PS417_02000 0.29 -1.8
444,777 + PS417_02000 0.30 -5.0
444,778 - PS417_02000 0.30 -1.6
444,778 - PS417_02000 0.30 -0.5
444,801 + PS417_02000 0.31 -4.3
444,802 - PS417_02000 0.31 -2.9
444,813 + PS417_02000 0.31 -4.2
444,814 - PS417_02000 0.31 -3.3
444,814 - PS417_02000 0.31 -1.1
444,814 - PS417_02000 0.31 -1.3
445,176 + PS417_02000 0.39 -2.2
445,515 + PS417_02000 0.47 -0.8
445,516 - PS417_02000 0.47 -4.3
445,803 + PS417_02000 0.53 -5.6
445,881 + PS417_02000 0.55 -1.6
445,882 - PS417_02000 0.55 -2.1
446,190 + PS417_02000 0.62 -6.1
446,190 + PS417_02000 0.62 -3.7
446,190 + PS417_02000 0.62 -1.5
446,352 + PS417_02000 0.66 -2.3
446,352 + -0.5
446,353 - PS417_02000 0.66 -0.8
446,353 - PS417_02000 0.66 -1.8
446,740 - PS417_02000 0.74 -2.3
446,853 + PS417_02000 0.77 -4.3
447,141 - PS417_02000 0.83 -4.6
447,297 + PS417_02000 0.87 -4.5
447,298 - PS417_02000 0.87 -2.9
447,298 - PS417_02000 0.87 -2.4
447,381 + PS417_02000 0.89 -1.3
447,423 + PS417_02000 0.90 -2.4
447,537 + -1.3
447,615 + +0.9
447,616 - -4.5
447,739 - -0.8
447,796 - -1.3
447,796 - +1.1
447,908 - -4.0
447,908 - -5.0
447,929 - -0.8
448,013 + -2.4
448,014 - -0.2
448,014 - -3.4
448,014 - -3.8
448,292 + PS417_02005 0.27 -4.6
448,292 + PS417_02005 0.27 -4.6
448,292 + PS417_02005 0.27 -5.5
448,292 + PS417_02005 0.27 -3.6
448,292 + PS417_02005 0.27 -2.9
448,292 + PS417_02005 0.27 -4.4
448,292 + PS417_02005 0.27 -3.7
448,293 - PS417_02005 0.27 -2.2
448,512 + PS417_02005 0.42 -3.7
448,614 - PS417_02005 0.50 -5.9
448,614 - PS417_02005 0.50 -5.4
448,643 + PS417_02005 0.52 -3.5
448,644 - PS417_02005 0.52 -4.0
448,644 - PS417_02005 0.52 -3.4
448,644 - PS417_02005 0.52 -2.3
448,644 - PS417_02005 0.52 -3.7
448,649 + PS417_02005 0.52 -5.5
448,650 - PS417_02005 0.52 -3.6
448,650 - PS417_02005 0.52 -4.0
448,691 + PS417_02005 0.55 -5.0
448,692 - PS417_02005 0.55 -2.6

Or see this region's nucleotide sequence