Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS23215

Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
3,354,147	+		RPSI07_RS23210	0.60	+0.5
3,354,147	+		RPSI07_RS23210	0.60	+1.1
3,354,147	+		RPSI07_RS23210	0.60	-0.0
3,354,147	+		RPSI07_RS23210	0.60	+3.1
3,354,147	+		RPSI07_RS23210	0.60	+0.5
3,354,148	-		RPSI07_RS23210	0.60	+2.1
3,354,148	-		RPSI07_RS23210	0.60	+2.1
3,354,184	-		RPSI07_RS23210	0.61	+0.2
3,354,210	+		RPSI07_RS23210	0.62	+2.5
3,354,210	+		RPSI07_RS23210	0.62	+0.5
3,354,290	+		RPSI07_RS23210	0.66	-0.9
3,354,290	+		RPSI07_RS23210	0.66	+0.0
3,354,290	+		RPSI07_RS23210	0.66	+2.3
3,354,291	-		RPSI07_RS23210	0.66	-0.5
3,354,291	-		RPSI07_RS23210	0.66	-0.0
3,354,291	-		RPSI07_RS23210	0.66	+0.4
3,354,346	-		RPSI07_RS23210	0.69	-1.4
3,354,346	-		RPSI07_RS23210	0.69	-0.5
3,354,346	-		RPSI07_RS23210	0.69	+0.4
3,354,346	-		RPSI07_RS23210	0.69	-0.4
3,354,346	-		RPSI07_RS23210	0.69	-1.4
3,354,351	+		RPSI07_RS23210	0.69	-0.6
3,354,351	+		RPSI07_RS23210	0.69	+0.0
3,354,352	-		RPSI07_RS23210	0.69	-0.5
3,354,352	-		RPSI07_RS23210	0.69	+0.2
3,354,353	-		RPSI07_RS23210	0.69	+0.5
3,354,379	-		RPSI07_RS23210	0.70	-0.1
3,354,465	+		RPSI07_RS23210	0.74	-0.2
3,354,465	+		RPSI07_RS23210	0.74	+0.2
3,354,466	-		RPSI07_RS23210	0.74	-1.3
3,354,466	-		RPSI07_RS23210	0.74	+0.3
3,354,466	-		RPSI07_RS23210	0.74	+2.5
3,354,466	-		RPSI07_RS23210	0.74	+0.4
3,354,466	-		RPSI07_RS23210	0.74	+0.5
3,354,531	+		RPSI07_RS23210	0.77	-2.5
3,354,531	+		RPSI07_RS23210	0.77	+0.0
3,354,531	+		RPSI07_RS23210	0.77	+0.3
3,354,531	+		RPSI07_RS23210	0.77	-1.3
3,354,531	+		RPSI07_RS23210	0.77	+1.8
3,354,531	+		RPSI07_RS23210	0.77	+3.3
3,354,531	+		RPSI07_RS23210	0.77	-0.9
3,354,531	+		RPSI07_RS23210	0.77	+0.3
3,354,531	+		RPSI07_RS23210	0.77	-0.7
3,354,531	+		RPSI07_RS23210	0.77	-3.1
3,354,531	+		RPSI07_RS23210	0.77	-2.8
3,354,531	+		RPSI07_RS23210	0.77	-0.7
3,354,531	+		RPSI07_RS23210	0.77	-0.3
3,354,531	+		RPSI07_RS23210	0.77	+0.8
3,354,532	-		RPSI07_RS23210	0.77	-0.5
3,354,532	-		RPSI07_RS23210	0.77	+0.5
3,354,532	-		RPSI07_RS23210	0.77	+0.5
3,354,532	-		RPSI07_RS23210	0.77	+0.7
3,354,532	-		RPSI07_RS23210	0.77	-0.7
3,354,532	-		RPSI07_RS23210	0.77	-0.2
3,354,532	-		RPSI07_RS23210	0.77	-0.9
3,354,532	-		RPSI07_RS23210	0.77	-0.0
3,354,538	-		RPSI07_RS23210	0.78	+0.2
3,354,572	-		RPSI07_RS23210	0.79	-0.5
3,354,592	-		RPSI07_RS23210	0.80	-2.3
3,354,636	+		RPSI07_RS23210	0.82	-1.5
3,354,699	+		RPSI07_RS23210	0.85	-0.1
3,354,699	+		RPSI07_RS23210	0.85	+2.0
3,354,764	+		RPSI07_RS23210	0.88	-0.5
3,354,764	+		RPSI07_RS23210	0.88	+0.6
3,354,764	+		RPSI07_RS23210	0.88	+0.8
3,354,765	-		RPSI07_RS23210	0.88	-0.2
3,354,765	-		RPSI07_RS23210	0.88	-0.3
3,354,768	+		RPSI07_RS23210	0.88	-0.3
3,354,768	+		RPSI07_RS23210	0.88	-0.4
3,354,768	+		RPSI07_RS23210	0.88	-0.3
3,354,768	+		RPSI07_RS23210	0.88	-0.7
3,354,768	+		RPSI07_RS23210	0.88	+0.5
3,354,768	+		RPSI07_RS23210	0.88	+0.2
3,354,768	+		RPSI07_RS23210	0.88	+0.3
3,354,768	+		RPSI07_RS23210	0.88	+0.6
3,354,769	-		RPSI07_RS23210	0.88	+1.6
3,354,769	-		RPSI07_RS23210	0.88	+0.5
3,354,769	-		RPSI07_RS23210	0.88	-0.2
3,354,769	-		RPSI07_RS23210	0.88	-0.7
3,354,769	-		RPSI07_RS23210	0.88	+0.5
3,354,769	-		RPSI07_RS23210	0.88	+1.8
3,354,774	+		RPSI07_RS23210	0.88	-2.4
3,354,774	+		RPSI07_RS23210	0.88	+0.5
3,354,774	+		RPSI07_RS23210	0.88	+0.6
3,354,774	+		RPSI07_RS23210	0.88	+0.3
3,354,774	+		RPSI07_RS23210	0.88	-0.3
3,354,774	+		RPSI07_RS23210	0.88	-0.2
3,354,774	+		RPSI07_RS23210	0.88	-0.7
3,354,774	+		RPSI07_RS23210	0.88	+0.6
3,354,775	-		RPSI07_RS23210	0.88	+0.2
3,354,775	-		RPSI07_RS23210	0.88	-0.3
3,354,775	-		RPSI07_RS23210	0.88	-1.2
3,354,775	-		RPSI07_RS23210	0.88	+0.1
3,354,775	-		RPSI07_RS23210	0.88	-0.6
3,354,775	-		RPSI07_RS23210	0.88	+2.3
3,354,894	+				-0.5
3,354,894	+				+0.2
3,354,895	-				-0.5
3,355,026	+				+0.5
3,355,026	+				-0.2
3,355,027	-				+1.3
3,355,027	-				-1.3
3,355,178	-				+0.5
3,355,178	-				+0.3
3,355,235	+				-1.8
3,355,374	-		RPSI07_RS23215	0.16	-0.7
3,355,374	-		RPSI07_RS23215	0.16	+2.8
3,355,374	-		RPSI07_RS23215	0.16	-0.5
3,355,374	-		RPSI07_RS23215	0.16	-0.3
3,355,374	-		RPSI07_RS23215	0.16	+0.5
3,355,374	-		RPSI07_RS23215	0.16	-0.1
3,355,374	-		RPSI07_RS23215	0.16	-1.4
3,355,374	-		RPSI07_RS23215	0.16	+0.5
3,355,374	-		RPSI07_RS23215	0.16	+0.1
3,355,374	-		RPSI07_RS23215	0.16	-0.3
3,355,376	-		RPSI07_RS23215	0.16	+0.0
3,355,376	-		RPSI07_RS23215	0.16	-0.6
3,355,376	-		RPSI07_RS23215	0.16	-0.5
3,355,377	-		RPSI07_RS23215	0.16	+0.3
3,355,377	-		RPSI07_RS23215	0.16	-1.2
3,355,397	-		RPSI07_RS23215	0.18	+3.1
3,355,397	-		RPSI07_RS23215	0.18	+0.7
3,355,397	-		RPSI07_RS23215	0.18	+1.5
3,355,397	-		RPSI07_RS23215	0.18	-0.2
3,355,433	-		RPSI07_RS23215	0.19	+2.8
3,355,442	+		RPSI07_RS23215	0.20	-0.2
3,355,442	+		RPSI07_RS23215	0.20	+0.5
3,355,442	+		RPSI07_RS23215	0.20	+2.5
3,355,442	+		RPSI07_RS23215	0.20	+0.5
3,355,442	+				+1.1
3,355,442	+		RPSI07_RS23215	0.20	+1.6
3,355,442	+		RPSI07_RS23215	0.20	+1.2
3,355,442	+		RPSI07_RS23215	0.20	+0.9
3,355,442	+		RPSI07_RS23215	0.20	+1.0
3,355,442	+		RPSI07_RS23215	0.20	+1.4
3,355,442	+		RPSI07_RS23215	0.20	-0.4
3,355,442	+		RPSI07_RS23215	0.20	-1.0
3,355,442	+		RPSI07_RS23215	0.20	+1.5
3,355,442	+		RPSI07_RS23215	0.20	+0.5
3,355,442	+		RPSI07_RS23215	0.20	-0.3
3,355,442	+		RPSI07_RS23215	0.20	-0.8
3,355,506	-		RPSI07_RS23215	0.23	+2.1
3,355,506	-		RPSI07_RS23215	0.23	+0.5
3,355,506	-		RPSI07_RS23215	0.23	+0.4
3,355,506	-		RPSI07_RS23215	0.23	-0.4
3,355,568	+		RPSI07_RS23215	0.27	+0.3
3,355,652	+		RPSI07_RS23215	0.31	-0.8
3,356,561	+		RPSI07_RS23215	0.80	+0.3
3,356,561	+		RPSI07_RS23215	0.80	-3.2
3,356,561	+		RPSI07_RS23215	0.80	-1.6
3,356,607	-		RPSI07_RS23215	0.82	+0.1
3,356,609	+		RPSI07_RS23215	0.82	+0.5
3,356,609	+		RPSI07_RS23215	0.82	+0.5
3,356,609	+		RPSI07_RS23215	0.82	+2.1
3,356,610	-		RPSI07_RS23215	0.83	+0.1
3,356,610	-		RPSI07_RS23215	0.83	+2.8
3,356,610	-		RPSI07_RS23215	0.83	-0.4
3,356,610	-		RPSI07_RS23215	0.83	-2.1
3,356,610	-		RPSI07_RS23215	0.83	+0.5
3,356,610	-		RPSI07_RS23215	0.83	-0.3
3,356,610	-		RPSI07_RS23215	0.83	-0.0
3,356,610	-		RPSI07_RS23215	0.83	-0.4
3,356,616	-		RPSI07_RS23215	0.83	-1.4
3,356,885	+				+0.5
3,356,885	+				-0.7
3,356,885	+				-0.4
3,356,885	+				+2.5
3,356,885	+				+0.5
3,356,885	+				+0.9
3,356,885	+				-1.0
3,356,885	+				-0.5
3,356,885	+				-1.0
3,356,886	-				-0.5
3,356,891	+				+1.5
3,356,891	+				-0.3
3,356,891	+				-0.3
3,356,891	+				-0.2
3,356,891	+				-1.5
3,356,891	+				-0.7
3,356,891	+				+1.4
3,356,891	+				-0.3
3,356,891	+				-1.1
3,356,891	+				+3.1
3,356,891	+				-0.1
3,356,891	+				-2.1
3,356,891	+				+2.5
3,356,891	+				-0.2
3,356,891	+				-0.1
3,356,891	+				-0.1
3,357,013	+				-0.3
3,357,013	+				-1.5
3,357,013	+				+0.6
3,357,013	+				+0.1
3,357,014	-				-0.4
3,357,014	-				-0.9
3,357,040	+				-0.6
3,357,040	+				-0.8
3,357,064	+				+0.5
3,357,082	+				-1.6
3,357,083	-				+0.7
3,357,086	-				+2.5
3,357,088	+				-1.8
3,357,089	-				-0.5
3,357,225	+				+0.5
3,357,225	+				+0.3
3,357,225	+				-1.2
3,357,225	+				+1.3
3,357,226	-				-1.0
3,357,232	+				-0.6
3,357,232	+				-0.9
3,357,235	+				-1.5
3,357,275	-				+1.2
3,357,275	-				+0.5
3,357,275	-				+0.7
3,357,295	+				+0.1
3,357,296	-				-0.7
3,357,338	+				+2.5
3,357,357	-				-1.6
3,357,818	+				+2.1
3,357,818	+				-0.7
3,357,819	-				-0.2
3,357,819	-				-0.3
3,357,819	-				-1.8
3,357,854	+				+0.5
3,357,854	+				-0.9
3,357,854	+				-0.7
3,357,854	+				-1.1
3,357,855	-				-2.9
3,357,855	-				+0.5
3,357,855	-				-0.6