Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS05515

Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
1,498,217	-		RPSI07_RS05510	0.31	+0.8
1,498,217	-		RPSI07_RS05510	0.31	-0.2
1,498,301	-		RPSI07_RS05510	0.37	+1.2
1,498,373	-		RPSI07_RS05510	0.43	-0.2
1,498,432	+		RPSI07_RS05510	0.47	+0.3
1,498,433	-		RPSI07_RS05510	0.47	-0.7
1,498,433	-		RPSI07_RS05510	0.47	-0.2
1,498,433	-		RPSI07_RS05510	0.47	-0.1
1,498,433	-		RPSI07_RS05510	0.47	-2.8
1,498,433	-		RPSI07_RS05510	0.47	-1.8
1,498,433	-		RPSI07_RS05510	0.47	-1.6
1,498,561	+		RPSI07_RS05510	0.57	+0.3
1,498,561	+		RPSI07_RS05510	0.57	-0.4
1,498,561	+		RPSI07_RS05510	0.57	-0.8
1,498,561	+		RPSI07_RS05510	0.57	+0.1
1,498,562	-		RPSI07_RS05510	0.57	+3.3
1,498,562	-		RPSI07_RS05510	0.57	-0.9
1,498,578	+		RPSI07_RS05510	0.58	+0.1
1,498,578	+		RPSI07_RS05510	0.58	-1.9
1,498,578	+		RPSI07_RS05510	0.58	-0.0
1,498,579	-		RPSI07_RS05510	0.58	-0.7
1,498,579	-		RPSI07_RS05510	0.58	+3.1
1,498,864	+		RPSI07_RS05510	0.79	-0.7
1,498,864	+		RPSI07_RS05510	0.79	-1.5
1,498,864	+		RPSI07_RS05510	0.79	-0.2
1,498,864	+		RPSI07_RS05510	0.79	-0.5
1,498,865	-		RPSI07_RS05510	0.79	-0.6
1,499,190	+				+0.4
1,499,190	+				-0.1
1,499,348	+				+0.6
1,499,583	-		RPSI07_RS05515	0.12	-1.2
1,500,329	+		RPSI07_RS05515	0.36	-0.6
1,500,329	+		RPSI07_RS05515	0.36	-0.6
1,500,330	-		RPSI07_RS05515	0.36	+0.5
1,500,330	-		RPSI07_RS05515	0.36	+0.8
1,500,330	-		RPSI07_RS05515	0.36	+0.0
1,500,330	-		RPSI07_RS05515	0.36	+0.2
1,500,434	+		RPSI07_RS05515	0.39	-1.1
1,500,701	+		RPSI07_RS05515	0.48	-0.5
1,500,701	+		RPSI07_RS05515	0.48	+0.4
1,500,702	-		RPSI07_RS05515	0.48	+0.6
1,500,702	-		RPSI07_RS05515	0.48	-0.8
1,500,702	-		RPSI07_RS05515	0.48	-1.8
1,500,830	+		RPSI07_RS05515	0.52	+0.1
1,500,830	+		RPSI07_RS05515	0.52	-0.1
1,500,830	+		RPSI07_RS05515	0.52	+0.0
1,500,830	+		RPSI07_RS05515	0.52	+0.1
1,500,830	+		RPSI07_RS05515	0.52	-1.3
1,500,830	+		RPSI07_RS05515	0.52	+0.4
1,500,831	-		RPSI07_RS05515	0.52	+0.8
1,500,831	-		RPSI07_RS05515	0.52	-0.4
1,500,831	-		RPSI07_RS05515	0.52	-0.8
1,500,831	-		RPSI07_RS05515	0.52	+1.2
1,500,836	+		RPSI07_RS05515	0.52	-0.8
1,500,836	+		RPSI07_RS05515	0.52	+0.3
1,500,836	+		RPSI07_RS05515	0.52	-0.4
1,500,837	-		RPSI07_RS05515	0.52	-0.1
1,500,837	-		RPSI07_RS05515	0.52	+0.3
1,500,837	-		RPSI07_RS05515	0.52	+3.1
1,500,837	-		RPSI07_RS05515	0.52	+0.8
1,500,837	-		RPSI07_RS05515	0.52	-0.1
1,501,194	-		RPSI07_RS05515	0.64	+1.8
1,501,325	+		RPSI07_RS05515	0.68	+0.2
1,501,325	+		RPSI07_RS05515	0.68	+1.3
1,501,326	-		RPSI07_RS05515	0.68	-0.7
1,501,326	-		RPSI07_RS05515	0.68	+1.8
1,501,326	-		RPSI07_RS05515	0.68	-0.8
1,501,358	+		RPSI07_RS05515	0.69	+1.7
1,501,358	+		RPSI07_RS05515	0.69	-0.2
1,501,358	+		RPSI07_RS05515	0.69	+1.8
1,501,359	-		RPSI07_RS05515	0.69	-0.6
1,501,359	-		RPSI07_RS05515	0.69	+0.8
1,501,395	-		RPSI07_RS05515	0.70	-0.6
1,501,404	-		RPSI07_RS05515	0.70	-1.0
1,501,404	-		RPSI07_RS05515	0.70	-0.7
1,501,502	+		RPSI07_RS05515	0.73	-0.6
1,501,502	+		RPSI07_RS05515	0.73	+2.3
1,501,502	+		RPSI07_RS05515	0.73	-0.5
1,501,502	+		RPSI07_RS05515	0.73	-1.3
1,501,502	+		RPSI07_RS05515	0.73	+0.2
1,501,503	-		RPSI07_RS05515	0.73	+0.2
1,501,503	-		RPSI07_RS05515	0.73	-1.0
1,501,503	-		RPSI07_RS05515	0.73	-0.5
1,501,539	+		RPSI07_RS05515	0.75	+1.4
1,501,802	+		RPSI07_RS05515	0.83	-2.2
1,501,802	+		RPSI07_RS05515	0.83	+1.4
1,501,802	+		RPSI07_RS05515	0.83	-0.3
1,501,802	+		RPSI07_RS05515	0.83	-0.8
1,501,802	+		RPSI07_RS05515	0.83	-1.2
1,501,803	-		RPSI07_RS05515	0.83	+0.8
1,501,803	-		RPSI07_RS05515	0.83	+0.3
1,501,803	-		RPSI07_RS05515	0.83	-0.1
1,501,803	-		RPSI07_RS05515	0.83	+0.4
1,501,803	-		RPSI07_RS05515	0.83	-1.9
1,501,803	-		RPSI07_RS05515	0.83	-1.8
1,501,803	-		RPSI07_RS05515	0.83	+1.1
1,501,823	+		RPSI07_RS05515	0.84	-1.2
1,501,823	+		RPSI07_RS05515	0.84	+0.3
1,501,823	+		RPSI07_RS05515	0.84	-0.1
1,501,823	+		RPSI07_RS05515	0.84	-0.8
1,501,824	-		RPSI07_RS05515	0.84	-1.2
1,501,824	-		RPSI07_RS05515	0.84	-1.6
1,501,824	-		RPSI07_RS05515	0.84	-0.8
1,501,824	-		RPSI07_RS05515	0.84	+0.8
1,501,824	-		RPSI07_RS05515	0.84	+1.8
1,502,042	+				-0.2
1,502,042	+				-0.0
1,502,042	+				+0.3
1,502,042	+				-0.5
1,502,043	-				+3.1
1,502,043	-				-0.2
1,502,225	+				+0.2
1,502,225	+				-1.1
1,502,225	+				+0.3
1,502,225	+				-0.4
1,502,226	-				+0.8
1,502,226	-				+0.0
1,502,226	-				+2.1
1,502,226	-				+0.4
1,502,226	-				-1.0
1,502,716	+		RPSI07_RS05520	0.12	-0.2
1,502,716	+		RPSI07_RS05520	0.12	-0.2
1,502,717	-		RPSI07_RS05520	0.12	-0.9
1,502,920	+		RPSI07_RS05520	0.19	+1.8
1,502,920	+		RPSI07_RS05520	0.19	-1.2
1,502,920	+		RPSI07_RS05520	0.19	-0.2
1,502,920	+		RPSI07_RS05520	0.19	+1.1
1,502,920	+		RPSI07_RS05520	0.19	-1.6
1,502,920	+		RPSI07_RS05520	0.19	+1.8
1,502,920	+		RPSI07_RS05520	0.19	-1.0
1,502,920	+		RPSI07_RS05520	0.19	+1.2
1,502,920	+		RPSI07_RS05520	0.19	+0.4
1,502,921	-		RPSI07_RS05520	0.19	+2.0
1,502,921	-		RPSI07_RS05520	0.19	+1.2
1,502,921	-		RPSI07_RS05520	0.19	+0.3
1,502,921	-		RPSI07_RS05520	0.19	+0.1
1,502,921	-		RPSI07_RS05520	0.19	+0.3
1,503,020	-				+0.2
1,503,020	-				-0.7
1,503,053	-		RPSI07_RS05520	0.23	+4.2
1,503,053	-		RPSI07_RS05520	0.23	-0.8
1,503,053	-		RPSI07_RS05520	0.23	-1.0
1,503,053	-		RPSI07_RS05520	0.23	-0.9
1,503,073	+		RPSI07_RS05520	0.24	+0.8
1,503,146	-		RPSI07_RS05520	0.26	+1.1