Strain Fitness in Pseudomonas putida KT2440 around PP_0763

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0762 and PP_0763 are separated by 293 nucleotidesPP_0763 and PP_0765 are separated by 331 nucleotides PP_0762: PP_0762 - Glycerate dehydrogenase, at 877,213 to 878,178 _0762 PP_0763: PP_0763 - Medium-chain-fatty-acid CoA ligase, at 878,472 to 880,154 _0763 PP_0765: PP_0765 - putative adhesin (DUF1302) (from data), at 880,486 to 882,372 _0765 Position (kb) 878 879 880 881Strain fitness (log2 ratio) -2 -1 0 1 2at 877.527 kb on + strand, within PP_0762at 877.528 kb on - strand, within PP_0762at 877.528 kb on - strand, within PP_0762at 877.645 kb on + strand, within PP_0762at 877.646 kb on - strand, within PP_0762at 877.740 kb on + strand, within PP_0762at 877.805 kb on + strand, within PP_0762at 877.806 kb on - strand, within PP_0762at 877.849 kb on - strand, within PP_0762at 877.849 kb on - strandat 877.849 kb on - strand, within PP_0762at 878.332 kb on - strandat 878.332 kb on - strandat 878.368 kb on + strandat 878.368 kb on + strandat 878.368 kb on + strandat 878.368 kb on + strandat 878.368 kb on + strandat 878.368 kb on + strandat 878.369 kb on - strandat 878.369 kb on - strandat 878.369 kb on - strandat 878.369 kb on - strandat 878.369 kb on - strandat 878.369 kb on - strandat 878.369 kb on - strandat 878.369 kb on - strandat 878.369 kb on - strandat 878.429 kb on - strandat 878.512 kb on - strandat 878.512 kb on - strandat 878.518 kb on - strandat 878.583 kb on + strandat 878.607 kb on + strandat 878.607 kb on + strandat 878.608 kb on - strandat 878.608 kb on - strandat 878.856 kb on + strand, within PP_0763at 878.955 kb on + strand, within PP_0763at 878.956 kb on - strand, within PP_0763at 878.956 kb on - strand, within PP_0763at 878.988 kb on + strand, within PP_0763at 879.027 kb on - strand, within PP_0763at 879.027 kb on - strand, within PP_0763at 879.033 kb on + strand, within PP_0763at 879.033 kb on + strand, within PP_0763at 879.034 kb on - strand, within PP_0763at 879.034 kb on - strand, within PP_0763at 879.034 kb on - strand, within PP_0763at 879.129 kb on - strand, within PP_0763at 879.165 kb on + strand, within PP_0763at 879.165 kb on + strand, within PP_0763at 879.165 kb on + strand, within PP_0763at 879.165 kb on + strand, within PP_0763at 879.165 kb on + strand, within PP_0763at 879.165 kb on + strand, within PP_0763at 879.166 kb on - strand, within PP_0763at 879.246 kb on + strand, within PP_0763at 879.246 kb on + strand, within PP_0763at 879.424 kb on - strand, within PP_0763at 879.424 kb on - strand, within PP_0763at 879.465 kb on + strand, within PP_0763at 879.466 kb on - strand, within PP_0763at 879.552 kb on + strand, within PP_0763at 879.552 kb on + strand, within PP_0763at 879.552 kb on + strand, within PP_0763at 879.553 kb on - strand, within PP_0763at 879.553 kb on - strand, within PP_0763at 879.553 kb on - strand, within PP_0763at 879.553 kb on - strand, within PP_0763at 879.557 kb on + strandat 879.558 kb on - strand, within PP_0763at 879.558 kb on - strand, within PP_0763at 879.558 kb on - strand, within PP_0763at 879.656 kb on - strand, within PP_0763at 879.684 kb on + strand, within PP_0763at 879.684 kb on + strand, within PP_0763at 879.685 kb on - strand, within PP_0763at 879.771 kb on + strand, within PP_0763at 879.771 kb on + strand, within PP_0763at 879.957 kb on - strand, within PP_0763at 880.010 kb on + strandat 880.011 kb on - strandat 880.011 kb on - strandat 880.011 kb on - strandat 880.049 kb on + strandat 880.152 kb on + strandat 880.247 kb on + strandat 880.339 kb on + strandat 880.340 kb on - strandat 880.340 kb on - strandat 880.341 kb on + strandat 880.342 kb on - strandat 880.342 kb on - strandat 880.458 kb on + strandat 880.469 kb on + strandat 880.478 kb on + strandat 880.765 kb on - strand, within PP_0765at 880.765 kb on - strand, within PP_0765at 880.765 kb on - strand, within PP_0765at 880.765 kb on - strand, within PP_0765at 880.787 kb on - strand, within PP_0765at 880.787 kb on - strand, within PP_0765at 880.819 kb on + strand, within PP_0765at 880.820 kb on - strand, within PP_0765at 880.820 kb on - strand, within PP_0765at 880.825 kb on + strand, within PP_0765at 880.826 kb on - strand, within PP_0765at 880.826 kb on - strand, within PP_0765at 880.826 kb on - strand, within PP_0765at 880.934 kb on - strand, within PP_0765at 880.942 kb on + strand, within PP_0765at 880.942 kb on + strand, within PP_0765at 880.942 kb on + strand, within PP_0765at 880.942 kb on + strand, within PP_0765at 880.942 kb on + strand, within PP_0765at 880.943 kb on - strand, within PP_0765at 880.943 kb on - strand, within PP_0765at 880.943 kb on - strand, within PP_0765at 880.988 kb on + strand, within PP_0765at 880.989 kb on - strand, within PP_0765at 881.007 kb on + strand, within PP_0765at 881.008 kb on - strand, within PP_0765at 881.008 kb on - strand, within PP_0765at 881.113 kb on + strand, within PP_0765at 881.114 kb on - strand, within PP_0765at 881.114 kb on - strand, within PP_0765

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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877,527 + PP_0762 0.33 -0.3
877,528 - PP_0762 0.33 -0.0
877,528 - PP_0762 0.33 -0.6
877,645 + PP_0762 0.45 +0.4
877,646 - PP_0762 0.45 +0.5
877,740 + PP_0762 0.55 +0.9
877,805 + PP_0762 0.61 +1.6
877,806 - PP_0762 0.61 +0.7
877,849 - PP_0762 0.66 -0.3
877,849 - +1.9
877,849 - PP_0762 0.66 +0.7
878,332 - -0.5
878,332 - -0.0
878,368 + +0.3
878,368 + -0.5
878,368 + -0.1
878,368 + +1.1
878,368 + +0.0
878,368 + +0.7
878,369 - +0.3
878,369 - +0.8
878,369 - +0.0
878,369 - +0.5
878,369 - +0.3
878,369 - -0.4
878,369 - -0.3
878,369 - +0.7
878,369 - +0.4
878,429 - -0.0
878,512 - +0.4
878,512 - -2.4
878,518 - -0.0
878,583 + +0.0
878,607 + +0.3
878,607 + -0.0
878,608 - -0.6
878,608 - +0.5
878,856 + PP_0763 0.23 +0.2
878,955 + PP_0763 0.29 -0.2
878,956 - PP_0763 0.29 +0.5
878,956 - PP_0763 0.29 +0.2
878,988 + PP_0763 0.31 -0.3
879,027 - PP_0763 0.33 -1.0
879,027 - PP_0763 0.33 -0.9
879,033 + PP_0763 0.33 +0.5
879,033 + PP_0763 0.33 +0.6
879,034 - PP_0763 0.33 -0.8
879,034 - PP_0763 0.33 +0.4
879,034 - PP_0763 0.33 +0.2
879,129 - PP_0763 0.39 -1.0
879,165 + PP_0763 0.41 -0.6
879,165 + PP_0763 0.41 +0.9
879,165 + PP_0763 0.41 +1.8
879,165 + PP_0763 0.41 +0.1
879,165 + PP_0763 0.41 +0.3
879,165 + PP_0763 0.41 +0.5
879,166 - PP_0763 0.41 +0.1
879,246 + PP_0763 0.46 -0.5
879,246 + PP_0763 0.46 +2.1
879,424 - PP_0763 0.57 +0.3
879,424 - PP_0763 0.57 -1.0
879,465 + PP_0763 0.59 +1.1
879,466 - PP_0763 0.59 +0.1
879,552 + PP_0763 0.64 +0.0
879,552 + PP_0763 0.64 -0.7
879,552 + PP_0763 0.64 -0.0
879,553 - PP_0763 0.64 -0.2
879,553 - PP_0763 0.64 -0.2
879,553 - PP_0763 0.64 -0.2
879,553 - PP_0763 0.64 -0.2
879,557 + +1.3
879,558 - PP_0763 0.65 +0.0
879,558 - PP_0763 0.65 -0.1
879,558 - PP_0763 0.65 -0.7
879,656 - PP_0763 0.70 -0.2
879,684 + PP_0763 0.72 +0.1
879,684 + PP_0763 0.72 -0.9
879,685 - PP_0763 0.72 -0.0
879,771 + PP_0763 0.77 -0.3
879,771 + PP_0763 0.77 +0.3
879,957 - PP_0763 0.88 -0.8
880,010 + +0.5
880,011 - +0.0
880,011 - +1.0
880,011 - -0.0
880,049 + +0.5
880,152 + +0.1
880,247 + -0.6
880,339 + +0.3
880,340 - -0.7
880,340 - -0.1
880,341 + +0.2
880,342 - -1.6
880,342 - +0.3
880,458 + -1.0
880,469 + +0.4
880,478 + +0.8
880,765 - PP_0765 0.15 +0.9
880,765 - PP_0765 0.15 +0.3
880,765 - PP_0765 0.15 -0.8
880,765 - PP_0765 0.15 +0.4
880,787 - PP_0765 0.16 -0.4
880,787 - PP_0765 0.16 -0.0
880,819 + PP_0765 0.18 +0.4
880,820 - PP_0765 0.18 -0.7
880,820 - PP_0765 0.18 +0.8
880,825 + PP_0765 0.18 -0.2
880,826 - PP_0765 0.18 -1.1
880,826 - PP_0765 0.18 -0.5
880,826 - PP_0765 0.18 -0.7
880,934 - PP_0765 0.24 +0.9
880,942 + PP_0765 0.24 -1.7
880,942 + PP_0765 0.24 -0.2
880,942 + PP_0765 0.24 -0.4
880,942 + PP_0765 0.24 +0.4
880,942 + PP_0765 0.24 +0.3
880,943 - PP_0765 0.24 +0.4
880,943 - PP_0765 0.24 -0.2
880,943 - PP_0765 0.24 -0.2
880,988 + PP_0765 0.27 +0.6
880,989 - PP_0765 0.27 +0.0
881,007 + PP_0765 0.28 +0.9
881,008 - PP_0765 0.28 +0.3
881,008 - PP_0765 0.28 +0.3
881,113 + PP_0765 0.33 -0.6
881,114 - PP_0765 0.33 -0.5
881,114 - PP_0765 0.33 +0.4

Or see this region's nucleotide sequence