Strain Fitness in Pseudomonas simiae WCS417 around PS417_28380

Experiment: Inosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_28375 and PS417_28380 overlap by 4 nucleotidesPS417_28380 and PS417_28385 are separated by 12 nucleotides PS417_28375: PS417_28375 - membrane protein, at 6,124,641 to 6,125,675 _28375 PS417_28380: PS417_28380 - protease, at 6,125,672 to 6,126,658 _28380 PS417_28385: PS417_28385 - membrane protein, at 6,126,671 to 6,128,575 _28385 Position (kb) 6125 6126 6127Strain fitness (log2 ratio) -3 -2 -1 0 1at 6125.051 kb on + strand, within PS417_28375at 6125.154 kb on - strand, within PS417_28375at 6125.156 kb on + strand, within PS417_28375at 6125.157 kb on - strand, within PS417_28375at 6125.270 kb on - strand, within PS417_28375at 6125.270 kb on - strand, within PS417_28375at 6125.596 kb on - strandat 6125.608 kb on + strandat 6125.796 kb on + strand, within PS417_28380at 6125.796 kb on + strand, within PS417_28380at 6125.796 kb on + strand, within PS417_28380at 6125.797 kb on - strand, within PS417_28380at 6125.797 kb on - strand, within PS417_28380at 6125.817 kb on + strand, within PS417_28380at 6125.829 kb on + strand, within PS417_28380at 6126.075 kb on + strand, within PS417_28380at 6126.075 kb on + strand, within PS417_28380at 6126.076 kb on - strand, within PS417_28380at 6126.079 kb on + strand, within PS417_28380at 6126.079 kb on + strand, within PS417_28380at 6126.080 kb on - strand, within PS417_28380at 6126.080 kb on - strand, within PS417_28380at 6126.080 kb on - strand, within PS417_28380at 6126.312 kb on + strand, within PS417_28380at 6126.313 kb on - strand, within PS417_28380at 6126.313 kb on - strand, within PS417_28380at 6126.563 kb on - strandat 6126.716 kb on - strandat 6126.725 kb on + strandat 6126.725 kb on + strandat 6126.725 kb on + strandat 6126.772 kb on + strandat 6126.773 kb on - strandat 6126.773 kb on - strandat 6126.816 kb on + strandat 6127.045 kb on - strand, within PS417_28385at 6127.045 kb on - strand, within PS417_28385at 6127.045 kb on - strand, within PS417_28385at 6127.256 kb on + strand, within PS417_28385at 6127.270 kb on + strand, within PS417_28385at 6127.271 kb on - strand, within PS417_28385at 6127.272 kb on + strand, within PS417_28385at 6127.272 kb on + strand, within PS417_28385at 6127.272 kb on + strand, within PS417_28385at 6127.272 kb on + strand, within PS417_28385at 6127.273 kb on - strand, within PS417_28385at 6127.273 kb on - strand, within PS417_28385at 6127.273 kb on - strand, within PS417_28385at 6127.273 kb on - strand, within PS417_28385at 6127.273 kb on - strand, within PS417_28385at 6127.505 kb on + strand, within PS417_28385at 6127.602 kb on + strand, within PS417_28385

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (N)
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6,125,051 + PS417_28375 0.40 -0.4
6,125,154 - PS417_28375 0.50 -0.4
6,125,156 + PS417_28375 0.50 +0.1
6,125,157 - PS417_28375 0.50 -0.3
6,125,270 - PS417_28375 0.61 +1.1
6,125,270 - PS417_28375 0.61 -0.5
6,125,596 - -0.3
6,125,608 + +0.4
6,125,796 + PS417_28380 0.13 +0.0
6,125,796 + PS417_28380 0.13 -0.1
6,125,796 + PS417_28380 0.13 -0.7
6,125,797 - PS417_28380 0.13 -0.2
6,125,797 - PS417_28380 0.13 -0.3
6,125,817 + PS417_28380 0.15 -2.8
6,125,829 + PS417_28380 0.16 -0.1
6,126,075 + PS417_28380 0.41 -0.1
6,126,075 + PS417_28380 0.41 -0.4
6,126,076 - PS417_28380 0.41 -0.5
6,126,079 + PS417_28380 0.41 -1.9
6,126,079 + PS417_28380 0.41 -1.1
6,126,080 - PS417_28380 0.41 -0.3
6,126,080 - PS417_28380 0.41 -0.3
6,126,080 - PS417_28380 0.41 -1.2
6,126,312 + PS417_28380 0.65 -0.2
6,126,313 - PS417_28380 0.65 +0.2
6,126,313 - PS417_28380 0.65 -3.3
6,126,563 - -1.3
6,126,716 - +0.9
6,126,725 + -0.3
6,126,725 + +0.6
6,126,725 + -0.8
6,126,772 + -0.8
6,126,773 - -0.1
6,126,773 - +0.0
6,126,816 + +0.2
6,127,045 - PS417_28385 0.20 +0.3
6,127,045 - PS417_28385 0.20 -0.1
6,127,045 - PS417_28385 0.20 -0.8
6,127,256 + PS417_28385 0.31 +0.3
6,127,270 + PS417_28385 0.31 +0.2
6,127,271 - PS417_28385 0.31 -0.8
6,127,272 + PS417_28385 0.32 +1.0
6,127,272 + PS417_28385 0.32 -0.9
6,127,272 + PS417_28385 0.32 +1.0
6,127,272 + PS417_28385 0.32 -0.3
6,127,273 - PS417_28385 0.32 -0.1
6,127,273 - PS417_28385 0.32 -0.3
6,127,273 - PS417_28385 0.32 -0.0
6,127,273 - PS417_28385 0.32 +0.3
6,127,273 - PS417_28385 0.32 -0.1
6,127,505 + PS417_28385 0.44 -0.8
6,127,602 + PS417_28385 0.49 +1.7

Or see this region's nucleotide sequence