Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1379 and PP_1380 are separated by 11 nucleotides PP_1380 and PP_1381 are separated by 10 nucleotides PP_1381 and PP_1382 are separated by 52 nucleotides
PP_1379: PP_1379 - 3-carboxy-cis,cis-muconate cycloisomerase, at 1,571,879 to 1,573,231
_1379
PP_1380: PP_1380 - 3-oxoadipate enol-lactonase 2, at 1,573,243 to 1,574,034
_1380
PP_1381: PP_1381 - 4-carboxymuconolactone decarboxylase, at 1,574,045 to 1,574,437
_1381
PP_1382: PP_1382 - putative porin-encoding gene, at 1,574,490 to 1,575,014
_1382
Position (kb) 1573
1574
1575 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1572.331 kb on + strand, within PP_1379 at 1572.332 kb on - strand, within PP_1379 at 1572.332 kb on - strand, within PP_1379 at 1572.384 kb on + strand, within PP_1379 at 1572.637 kb on + strand, within PP_1379 at 1572.637 kb on + strand, within PP_1379 at 1572.834 kb on + strand, within PP_1379 at 1572.835 kb on - strand, within PP_1379 at 1572.866 kb on - strand, within PP_1379 at 1573.166 kb on + strand at 1573.279 kb on + strand at 1573.280 kb on - strand at 1573.280 kb on - strand at 1573.399 kb on + strand, within PP_1380 at 1573.400 kb on - strand, within PP_1380 at 1573.444 kb on + strand, within PP_1380 at 1573.444 kb on + strand, within PP_1380 at 1573.445 kb on - strand, within PP_1380 at 1573.445 kb on - strand, within PP_1380 at 1573.755 kb on + strand, within PP_1380 at 1573.755 kb on + strand, within PP_1380 at 1573.792 kb on + strand, within PP_1380 at 1573.793 kb on - strand, within PP_1380 at 1573.945 kb on + strand, within PP_1380 at 1573.946 kb on - strand, within PP_1380 at 1574.063 kb on + strand at 1574.064 kb on - strand at 1574.064 kb on - strand at 1574.355 kb on - strand, within PP_1381 at 1574.435 kb on + strand at 1574.435 kb on + strand at 1574.435 kb on + strand at 1574.491 kb on + strand at 1574.492 kb on - strand at 1574.492 kb on - strand at 1574.659 kb on + strand, within PP_1382 at 1574.663 kb on - strand, within PP_1382 at 1574.663 kb on - strand, within PP_1382 at 1574.663 kb on - strand, within PP_1382 at 1574.663 kb on - strand, within PP_1382 at 1574.724 kb on + strand, within PP_1382 at 1574.724 kb on + strand, within PP_1382 at 1574.724 kb on + strand, within PP_1382 at 1574.725 kb on - strand, within PP_1382 at 1574.877 kb on + strand, within PP_1382 at 1574.877 kb on + strand, within PP_1382 at 1574.877 kb on + strand, within PP_1382 at 1574.877 kb on + strand, within PP_1382 at 1574.878 kb on - strand, within PP_1382 at 1574.878 kb on - strand, within PP_1382 at 1574.975 kb on - strand at 1574.983 kb on + strand at 1574.984 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 1,572,331 + PP_1379 0.33 -3.3 1,572,332 - PP_1379 0.33 -3.6 1,572,332 - PP_1379 0.33 -1.7 1,572,384 + PP_1379 0.37 -2.9 1,572,637 + PP_1379 0.56 -3.9 1,572,637 + PP_1379 0.56 -4.3 1,572,834 + PP_1379 0.71 -2.2 1,572,835 - PP_1379 0.71 -2.6 1,572,866 - PP_1379 0.73 -2.5 1,573,166 + -3.5 1,573,279 + -3.1 1,573,280 - -4.1 1,573,280 - -0.9 1,573,399 + PP_1380 0.20 -3.8 1,573,400 - PP_1380 0.20 -1.6 1,573,444 + PP_1380 0.25 -1.6 1,573,444 + PP_1380 0.25 -2.4 1,573,445 - PP_1380 0.26 -4.3 1,573,445 - PP_1380 0.26 -4.1 1,573,755 + PP_1380 0.65 -3.3 1,573,755 + PP_1380 0.65 -3.6 1,573,792 + PP_1380 0.69 -2.6 1,573,793 - PP_1380 0.69 -3.1 1,573,945 + PP_1380 0.89 -3.1 1,573,946 - PP_1380 0.89 -3.1 1,574,063 + -4.5 1,574,064 - -3.3 1,574,064 - -4.2 1,574,355 - PP_1381 0.79 -4.4 1,574,435 + -0.2 1,574,435 + +0.1 1,574,435 + +0.6 1,574,491 + +0.4 1,574,492 - -0.2 1,574,492 - +0.5 1,574,659 + PP_1382 0.32 +0.8 1,574,663 - PP_1382 0.33 +0.3 1,574,663 - PP_1382 0.33 -0.4 1,574,663 - PP_1382 0.33 +0.9 1,574,663 - PP_1382 0.33 +0.1 1,574,724 + PP_1382 0.45 +0.3 1,574,724 + PP_1382 0.45 -0.4 1,574,724 + PP_1382 0.45 -0.1 1,574,725 - PP_1382 0.45 +0.4 1,574,877 + PP_1382 0.74 +0.9 1,574,877 + PP_1382 0.74 +0.2 1,574,877 + PP_1382 0.74 +0.5 1,574,877 + PP_1382 0.74 -0.8 1,574,878 - PP_1382 0.74 -0.8 1,574,878 - PP_1382 0.74 +0.3 1,574,975 - -0.3 1,574,983 + +0.1 1,574,984 - +0.2
Or see this region's nucleotide sequence