Strain Fitness in Pseudomonas simiae WCS417 around PS417_03600

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03595 and PS417_03600 are separated by 183 nucleotidesPS417_03600 and PS417_03605 overlap by 4 nucleotides PS417_03595: PS417_03595 - hypothetical protein, at 816,831 to 818,555 _03595 PS417_03600: PS417_03600 - glutamyl-tRNA reductase, at 818,739 to 820,028 _03600 PS417_03605: PS417_03605 - peptide chain release factor 1, at 820,025 to 821,107 _03605 Position (kb) 818 819 820 821Strain fitness (log2 ratio) -1 0 1at 818.550 kb on - strandat 818.558 kb on - strandat 818.558 kb on - strandat 818.558 kb on - strandat 818.558 kb on - strandat 818.654 kb on + strandat 818.654 kb on + strandat 818.654 kb on + strandat 818.655 kb on - strandat 818.656 kb on + strandat 818.656 kb on + strandat 818.666 kb on - strandat 820.001 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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818,550 - -1.4
818,558 - -0.3
818,558 - +0.0
818,558 - -0.9
818,558 - -0.8
818,654 + -0.3
818,654 + -0.4
818,654 + -0.2
818,655 - +0.5
818,656 + -0.1
818,656 + -0.4
818,666 - -0.4
820,001 + +0.1

Or see this region's nucleotide sequence