Strain Fitness in Pseudomonas simiae WCS417 around PS417_03365

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03360 and PS417_03365 overlap by 4 nucleotidesPS417_03365 and PS417_03370 are separated by 344 nucleotides PS417_03360: PS417_03360 - histidine kinase, at 772,739 to 774,175 _03360 PS417_03365: PS417_03365 - transcriptional regulator, at 774,172 to 774,846 _03365 PS417_03370: PS417_03370 - porin, at 775,191 to 776,510 _03370 Position (kb) 774 775Strain fitness (log2 ratio) -2 -1 0 1at 773.346 kb on + strand, within PS417_03360at 773.346 kb on + strand, within PS417_03360at 773.347 kb on - strand, within PS417_03360at 773.689 kb on - strand, within PS417_03360at 773.742 kb on - strand, within PS417_03360at 773.745 kb on + strand, within PS417_03360at 773.745 kb on + strand, within PS417_03360at 773.746 kb on - strand, within PS417_03360at 773.820 kb on + strand, within PS417_03360at 773.820 kb on + strand, within PS417_03360at 773.928 kb on + strand, within PS417_03360at 773.932 kb on + strand, within PS417_03360at 773.932 kb on + strand, within PS417_03360at 773.932 kb on + strand, within PS417_03360at 773.932 kb on + strand, within PS417_03360at 774.087 kb on + strandat 774.163 kb on + strandat 774.557 kb on + strand, within PS417_03365at 774.557 kb on + strand, within PS417_03365at 774.557 kb on + strand, within PS417_03365at 774.558 kb on - strand, within PS417_03365at 774.767 kb on - strand, within PS417_03365at 774.767 kb on - strand, within PS417_03365at 774.774 kb on - strand, within PS417_03365at 774.803 kb on + strandat 774.840 kb on + strandat 774.854 kb on + strandat 774.855 kb on - strandat 774.855 kb on - strandat 774.909 kb on - strandat 775.043 kb on + strandat 775.122 kb on + strandat 775.123 kb on - strandat 775.157 kb on + strandat 775.158 kb on - strandat 775.178 kb on + strandat 775.178 kb on + strandat 775.178 kb on + strandat 775.321 kb on + strandat 775.321 kb on + strandat 775.322 kb on - strandat 775.393 kb on + strand, within PS417_03370at 775.393 kb on + strand, within PS417_03370at 775.394 kb on - strand, within PS417_03370at 775.414 kb on + strand, within PS417_03370at 775.537 kb on + strand, within PS417_03370at 775.537 kb on + strand, within PS417_03370at 775.582 kb on + strand, within PS417_03370at 775.583 kb on - strand, within PS417_03370at 775.700 kb on + strand, within PS417_03370at 775.700 kb on + strand, within PS417_03370at 775.700 kb on + strand, within PS417_03370at 775.700 kb on + strand, within PS417_03370at 775.701 kb on - strand, within PS417_03370at 775.720 kb on + strand, within PS417_03370at 775.720 kb on + strand, within PS417_03370at 775.721 kb on - strand, within PS417_03370at 775.721 kb on - strand, within PS417_03370at 775.723 kb on + strand, within PS417_03370at 775.724 kb on - strand, within PS417_03370at 775.724 kb on - strand, within PS417_03370at 775.724 kb on - strand, within PS417_03370at 775.786 kb on + strand, within PS417_03370at 775.786 kb on + strand, within PS417_03370

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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773,346 + PS417_03360 0.42 +0.2
773,346 + PS417_03360 0.42 -1.5
773,347 - PS417_03360 0.42 +0.3
773,689 - PS417_03360 0.66 -0.5
773,742 - PS417_03360 0.70 +0.1
773,745 + PS417_03360 0.70 +0.0
773,745 + PS417_03360 0.70 +0.7
773,746 - PS417_03360 0.70 -0.7
773,820 + PS417_03360 0.75 -0.6
773,820 + PS417_03360 0.75 -1.6
773,928 + PS417_03360 0.83 +0.4
773,932 + PS417_03360 0.83 +0.1
773,932 + PS417_03360 0.83 -0.3
773,932 + PS417_03360 0.83 +1.5
773,932 + PS417_03360 0.83 -0.5
774,087 + +0.1
774,163 + -1.0
774,557 + PS417_03365 0.57 +0.7
774,557 + PS417_03365 0.57 +0.1
774,557 + PS417_03365 0.57 -0.5
774,558 - PS417_03365 0.57 +1.1
774,767 - PS417_03365 0.88 +0.4
774,767 - PS417_03365 0.88 -0.2
774,774 - PS417_03365 0.89 +0.1
774,803 + +0.1
774,840 + -0.3
774,854 + +0.1
774,855 - -1.2
774,855 - -0.4
774,909 - -0.2
775,043 + +0.4
775,122 + +0.5
775,123 - -1.1
775,157 + -0.4
775,158 - -0.3
775,178 + +0.6
775,178 + +0.1
775,178 + -0.2
775,321 + +0.1
775,321 + +0.3
775,322 - -0.1
775,393 + PS417_03370 0.15 +0.2
775,393 + PS417_03370 0.15 -0.3
775,394 - PS417_03370 0.15 +0.2
775,414 + PS417_03370 0.17 -0.1
775,537 + PS417_03370 0.26 +0.2
775,537 + PS417_03370 0.26 +0.9
775,582 + PS417_03370 0.30 -1.9
775,583 - PS417_03370 0.30 -0.3
775,700 + PS417_03370 0.39 +0.2
775,700 + PS417_03370 0.39 -0.1
775,700 + PS417_03370 0.39 -1.2
775,700 + PS417_03370 0.39 -0.2
775,701 - PS417_03370 0.39 -0.0
775,720 + PS417_03370 0.40 +0.0
775,720 + PS417_03370 0.40 +1.0
775,721 - PS417_03370 0.40 +0.0
775,721 - PS417_03370 0.40 -0.3
775,723 + PS417_03370 0.40 +0.4
775,724 - PS417_03370 0.40 +0.6
775,724 - PS417_03370 0.40 -0.5
775,724 - PS417_03370 0.40 -0.1
775,786 + PS417_03370 0.45 +0.6
775,786 + PS417_03370 0.45 -0.1

Or see this region's nucleotide sequence