Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27520 and PS417_27525 are separated by 18 nucleotides PS417_27525 and PS417_27530 overlap by 4 nucleotides PS417_27530 and PS417_27535 are separated by 138 nucleotides
PS417_27520: PS417_27520 - uroporphyrin-III methyltransferase, at 5,937,452 to 5,938,564
_27520
PS417_27525: PS417_27525 - uroporphyrinogen-III synthase, at 5,938,583 to 5,939,341
_27525
PS417_27530: PS417_27530 - porphobilinogen deaminase, at 5,939,338 to 5,940,279
_27530
PS417_27535: PS417_27535 - chemotaxis protein CheY, at 5,940,418 to 5,941,164
_27535
Position (kb)
5939
5940
5941 Strain fitness (log2 ratio)
-2
-1
0
1 at 5938.543 kb on + strand at 5938.566 kb on + strand at 5938.567 kb on - strand at 5940.299 kb on - strand at 5940.315 kb on - strand at 5940.330 kb on + strand at 5940.665 kb on + strand, within PS417_27535 at 5940.665 kb on + strand, within PS417_27535 at 5940.665 kb on + strand, within PS417_27535 at 5940.665 kb on + strand, within PS417_27535 at 5940.665 kb on + strand, within PS417_27535 at 5940.665 kb on + strand, within PS417_27535 at 5940.665 kb on + strand, within PS417_27535 at 5940.666 kb on - strand, within PS417_27535 at 5940.666 kb on - strand, within PS417_27535 at 5941.078 kb on + strand, within PS417_27535 at 5941.078 kb on + strand, within PS417_27535 at 5941.079 kb on - strand, within PS417_27535 at 5941.164 kb on + strand at 5941.206 kb on + strand at 5941.206 kb on + strand at 5941.207 kb on - strand at 5941.251 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 5,938,543 + +0.1 5,938,566 + -0.6 5,938,567 - -0.0 5,940,299 - +0.4 5,940,315 - +0.6 5,940,330 + +0.3 5,940,665 + PS417_27535 0.33 +0.8 5,940,665 + PS417_27535 0.33 -0.4 5,940,665 + PS417_27535 0.33 +0.1 5,940,665 + PS417_27535 0.33 +0.8 5,940,665 + PS417_27535 0.33 +0.6 5,940,665 + PS417_27535 0.33 +0.7 5,940,665 + PS417_27535 0.33 +0.2 5,940,666 - PS417_27535 0.33 +0.1 5,940,666 - PS417_27535 0.33 +0.5 5,941,078 + PS417_27535 0.88 +0.2 5,941,078 + PS417_27535 0.88 -0.0 5,941,079 - PS417_27535 0.88 -0.1 5,941,164 + +0.9 5,941,206 + -0.2 5,941,206 + -0.2 5,941,207 - -1.5 5,941,251 - -1.8
Or see this region's nucleotide sequence