Strain Fitness in Pseudomonas simiae WCS417 around PS417_27525

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27520 and PS417_27525 are separated by 18 nucleotidesPS417_27525 and PS417_27530 overlap by 4 nucleotides PS417_27520: PS417_27520 - uroporphyrin-III methyltransferase, at 5,937,452 to 5,938,564 _27520 PS417_27525: PS417_27525 - uroporphyrinogen-III synthase, at 5,938,583 to 5,939,341 _27525 PS417_27530: PS417_27530 - porphobilinogen deaminase, at 5,939,338 to 5,940,279 _27530 Position (kb) 5938 5939 5940Strain fitness (log2 ratio) -1 0 1at 5937.681 kb on + strand, within PS417_27520at 5937.906 kb on + strand, within PS417_27520at 5937.966 kb on + strand, within PS417_27520at 5937.966 kb on + strand, within PS417_27520at 5937.968 kb on + strand, within PS417_27520at 5937.969 kb on - strand, within PS417_27520at 5938.183 kb on + strand, within PS417_27520at 5938.543 kb on + strandat 5938.566 kb on + strandat 5938.567 kb on - strandat 5940.299 kb on - strandat 5940.315 kb on - strandat 5940.330 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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5,937,681 + PS417_27520 0.21 -0.4
5,937,906 + PS417_27520 0.41 -1.4
5,937,966 + PS417_27520 0.46 -0.3
5,937,966 + PS417_27520 0.46 -0.7
5,937,968 + PS417_27520 0.46 -0.5
5,937,969 - PS417_27520 0.46 -0.2
5,938,183 + PS417_27520 0.66 +0.2
5,938,543 + +0.1
5,938,566 + -0.6
5,938,567 - -0.0
5,940,299 - +0.4
5,940,315 - +0.6
5,940,330 + +0.3

Or see this region's nucleotide sequence