Strain Fitness in Pseudomonas simiae WCS417 around PS417_24610

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24600 and PS417_24605 are separated by 18 nucleotidesPS417_24605 and PS417_24610 are separated by 17 nucleotidesPS417_24610 and PS417_24615 are separated by 225 nucleotidesPS417_24615 and PS417_24620 are separated by 128 nucleotides PS417_24600: PS417_24600 - hydrogenase, at 5,339,202 to 5,339,999 _24600 PS417_24605: PS417_24605 - thiamine-phosphate pyrophosphorylase, at 5,340,018 to 5,340,641 _24605 PS417_24610: PS417_24610 - glutamate-1-semialdehyde 2,1-aminomutase, at 5,340,659 to 5,341,942 _24610 PS417_24615: PS417_24615 - hypothetical protein, at 5,342,168 to 5,342,722 _24615 PS417_24620: PS417_24620 - hypothetical protein, at 5,342,851 to 5,343,177 _24620 Position (kb) 5340 5341 5342Strain fitness (log2 ratio) -2 -1 0 1at 5339.703 kb on + strand, within PS417_24600at 5339.703 kb on + strand, within PS417_24600at 5339.703 kb on + strand, within PS417_24600at 5339.820 kb on + strand, within PS417_24600at 5339.913 kb on + strand, within PS417_24600at 5339.913 kb on + strand, within PS417_24600at 5339.913 kb on + strand, within PS417_24600at 5339.914 kb on - strand, within PS417_24600at 5340.003 kb on + strandat 5340.003 kb on + strandat 5340.081 kb on + strand, within PS417_24605at 5340.197 kb on + strand, within PS417_24605at 5340.384 kb on + strand, within PS417_24605at 5340.384 kb on + strand, within PS417_24605at 5340.384 kb on + strand, within PS417_24605at 5342.044 kb on + strandat 5342.044 kb on + strandat 5342.083 kb on + strandat 5342.099 kb on + strandat 5342.099 kb on + strandat 5342.099 kb on + strandat 5342.099 kb on + strandat 5342.106 kb on + strandat 5342.155 kb on + strandat 5342.432 kb on + strand, within PS417_24615at 5342.666 kb on + strand, within PS417_24615at 5342.667 kb on - strandat 5342.852 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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5,339,703 + PS417_24600 0.63 -0.0
5,339,703 + PS417_24600 0.63 -1.8
5,339,703 + PS417_24600 0.63 +0.2
5,339,820 + PS417_24600 0.77 -0.5
5,339,913 + PS417_24600 0.89 +0.1
5,339,913 + PS417_24600 0.89 +0.3
5,339,913 + PS417_24600 0.89 -0.7
5,339,914 - PS417_24600 0.89 +0.0
5,340,003 + +0.5
5,340,003 + -0.1
5,340,081 + PS417_24605 0.10 -0.5
5,340,197 + PS417_24605 0.29 -0.8
5,340,384 + PS417_24605 0.59 +0.3
5,340,384 + PS417_24605 0.59 -0.3
5,340,384 + PS417_24605 0.59 +0.1
5,342,044 + +0.4
5,342,044 + +0.2
5,342,083 + +0.1
5,342,099 + +0.6
5,342,099 + +0.3
5,342,099 + +0.2
5,342,099 + +0.4
5,342,106 + -0.1
5,342,155 + -0.9
5,342,432 + PS417_24615 0.48 -0.0
5,342,666 + PS417_24615 0.90 -1.1
5,342,667 - -0.8
5,342,852 + -0.3

Or see this region's nucleotide sequence