Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24600 and PS417_24605 are separated by 18 nucleotides PS417_24605 and PS417_24610 are separated by 17 nucleotides PS417_24610 and PS417_24615 are separated by 225 nucleotides PS417_24615 and PS417_24620 are separated by 128 nucleotides
PS417_24600: PS417_24600 - hydrogenase, at 5,339,202 to 5,339,999
_24600
PS417_24605: PS417_24605 - thiamine-phosphate pyrophosphorylase, at 5,340,018 to 5,340,641
_24605
PS417_24610: PS417_24610 - glutamate-1-semialdehyde 2,1-aminomutase, at 5,340,659 to 5,341,942
_24610
PS417_24615: PS417_24615 - hypothetical protein, at 5,342,168 to 5,342,722
_24615
PS417_24620: PS417_24620 - hypothetical protein, at 5,342,851 to 5,343,177
_24620
Position (kb)
5340
5341
5342 Strain fitness (log2 ratio)
-2
-1
0
1 at 5339.703 kb on + strand, within PS417_24600 at 5339.703 kb on + strand, within PS417_24600 at 5339.703 kb on + strand, within PS417_24600 at 5339.820 kb on + strand, within PS417_24600 at 5339.913 kb on + strand, within PS417_24600 at 5339.913 kb on + strand, within PS417_24600 at 5339.913 kb on + strand, within PS417_24600 at 5339.914 kb on - strand, within PS417_24600 at 5340.003 kb on + strand at 5340.003 kb on + strand at 5340.081 kb on + strand, within PS417_24605 at 5340.197 kb on + strand, within PS417_24605 at 5340.384 kb on + strand, within PS417_24605 at 5340.384 kb on + strand, within PS417_24605 at 5340.384 kb on + strand, within PS417_24605 at 5342.044 kb on + strand at 5342.044 kb on + strand at 5342.083 kb on + strand at 5342.099 kb on + strand at 5342.099 kb on + strand at 5342.099 kb on + strand at 5342.099 kb on + strand at 5342.106 kb on + strand at 5342.155 kb on + strand at 5342.432 kb on + strand, within PS417_24615 at 5342.666 kb on + strand, within PS417_24615 at 5342.667 kb on - strand at 5342.852 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 5,339,703 + PS417_24600 0.63 -0.0 5,339,703 + PS417_24600 0.63 -1.8 5,339,703 + PS417_24600 0.63 +0.2 5,339,820 + PS417_24600 0.77 -0.5 5,339,913 + PS417_24600 0.89 +0.1 5,339,913 + PS417_24600 0.89 +0.3 5,339,913 + PS417_24600 0.89 -0.7 5,339,914 - PS417_24600 0.89 +0.0 5,340,003 + +0.5 5,340,003 + -0.1 5,340,081 + PS417_24605 0.10 -0.5 5,340,197 + PS417_24605 0.29 -0.8 5,340,384 + PS417_24605 0.59 +0.3 5,340,384 + PS417_24605 0.59 -0.3 5,340,384 + PS417_24605 0.59 +0.1 5,342,044 + +0.4 5,342,044 + +0.2 5,342,083 + +0.1 5,342,099 + +0.6 5,342,099 + +0.3 5,342,099 + +0.2 5,342,099 + +0.4 5,342,106 + -0.1 5,342,155 + -0.9 5,342,432 + PS417_24615 0.48 -0.0 5,342,666 + PS417_24615 0.90 -1.1 5,342,667 - -0.8 5,342,852 + -0.3
Or see this region's nucleotide sequence