Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22630 and PS417_22635 are separated by 216 nucleotides PS417_22635 and PS417_22640 are separated by 91 nucleotides
PS417_22630: PS417_22630 - hypothetical protein, at 4,899,686 to 4,900,618
_22630
PS417_22635: PS417_22635 - fumarate hydratase, at 4,900,835 to 4,902,358
_22635
PS417_22640: PS417_22640 - cytochrome C biogenesis protein CcmE, at 4,902,450 to 4,904,216
_22640
Position (kb)
4900
4901
4902
4903 Strain fitness (log2 ratio)
-1
0
1 at 4899.919 kb on - strand, within PS417_22630 at 4900.068 kb on + strand, within PS417_22630 at 4900.525 kb on - strand at 4900.618 kb on + strand at 4900.618 kb on + strand at 4900.619 kb on - strand at 4900.620 kb on + strand at 4900.621 kb on - strand at 4900.621 kb on - strand at 4900.621 kb on - strand at 4900.621 kb on - strand at 4900.621 kb on - strand at 4900.621 kb on - strand at 4900.621 kb on - strand at 4900.621 kb on - strand at 4900.679 kb on - strand at 4900.679 kb on - strand at 4900.726 kb on + strand at 4900.819 kb on + strand at 4900.819 kb on + strand at 4900.820 kb on - strand at 4902.356 kb on + strand at 4902.356 kb on + strand at 4902.357 kb on - strand at 4902.357 kb on - strand at 4902.413 kb on + strand at 4902.413 kb on + strand at 4902.413 kb on + strand at 4902.414 kb on - strand at 4902.449 kb on + strand at 4902.450 kb on - strand at 4902.457 kb on + strand at 4902.562 kb on + strand at 4902.600 kb on + strand at 4902.600 kb on + strand at 4902.832 kb on - strand, within PS417_22640 at 4902.862 kb on - strand, within PS417_22640 at 4902.933 kb on + strand, within PS417_22640 at 4903.162 kb on - strand, within PS417_22640 at 4903.264 kb on - strand, within PS417_22640
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 4,899,919 - PS417_22630 0.25 +0.1 4,900,068 + PS417_22630 0.41 -0.1 4,900,525 - +0.3 4,900,618 + -1.6 4,900,618 + -0.0 4,900,619 - +0.4 4,900,620 + -0.3 4,900,621 - +0.2 4,900,621 - -0.3 4,900,621 - -0.1 4,900,621 - +0.2 4,900,621 - -0.3 4,900,621 - +0.1 4,900,621 - -1.0 4,900,621 - -0.3 4,900,679 - +0.7 4,900,679 - +0.6 4,900,726 + -1.3 4,900,819 + -0.6 4,900,819 + -0.7 4,900,820 - +0.1 4,902,356 + +0.6 4,902,356 + -0.3 4,902,357 - -0.6 4,902,357 - -1.0 4,902,413 + +1.2 4,902,413 + +0.3 4,902,413 + -0.2 4,902,414 - +0.1 4,902,449 + -0.4 4,902,450 - -0.2 4,902,457 + +0.7 4,902,562 + -0.2 4,902,600 + +0.5 4,902,600 + +0.7 4,902,832 - PS417_22640 0.22 +0.3 4,902,862 - PS417_22640 0.23 -0.3 4,902,933 + PS417_22640 0.27 +0.2 4,903,162 - PS417_22640 0.40 +0.4 4,903,264 - PS417_22640 0.46 -0.1
Or see this region's nucleotide sequence