Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01725 and PS417_01730 are separated by 69 nucleotides PS417_01730 and PS417_01735 are separated by 71 nucleotides
PS417_01725: PS417_01725 - sulfonate ABC transporter substrate-binding protein, at 382,541 to 383,998
_01725
PS417_01730: PS417_01730 - histidine ABC transporter substrate-binding protein, at 384,068 to 385,033
_01730
PS417_01735: PS417_01735 - ABC transporter permease, at 385,105 to 385,956
_01735
Position (kb) 384
385
386 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 383.223 kb on - strand, within PS417_01725 at 383.363 kb on + strand, within PS417_01725 at 383.364 kb on - strand, within PS417_01725 at 383.364 kb on - strand, within PS417_01725 at 383.408 kb on + strand, within PS417_01725 at 383.409 kb on - strand, within PS417_01725 at 383.456 kb on + strand, within PS417_01725 at 383.672 kb on + strand, within PS417_01725 at 383.672 kb on + strand, within PS417_01725 at 383.766 kb on - strand at 383.813 kb on + strand, within PS417_01725 at 383.851 kb on + strand, within PS417_01725 at 383.891 kb on + strand at 383.891 kb on + strand at 383.892 kb on - strand at 383.894 kb on + strand at 383.894 kb on + strand at 383.895 kb on - strand at 383.895 kb on - strand at 383.965 kb on - strand at 384.037 kb on - strand at 384.079 kb on + strand at 384.080 kb on - strand at 384.080 kb on - strand at 384.243 kb on - strand, within PS417_01730 at 384.310 kb on + strand, within PS417_01730 at 384.425 kb on + strand, within PS417_01730 at 384.425 kb on + strand, within PS417_01730 at 384.425 kb on + strand, within PS417_01730 at 384.437 kb on + strand, within PS417_01730 at 384.438 kb on - strand, within PS417_01730 at 384.497 kb on - strand, within PS417_01730 at 384.515 kb on + strand, within PS417_01730 at 384.516 kb on - strand, within PS417_01730 at 384.516 kb on - strand, within PS417_01730 at 384.563 kb on + strand, within PS417_01730 at 384.563 kb on + strand, within PS417_01730 at 384.639 kb on - strand at 384.639 kb on - strand, within PS417_01730 at 384.695 kb on + strand, within PS417_01730 at 384.695 kb on + strand, within PS417_01730 at 384.695 kb on + strand, within PS417_01730 at 384.725 kb on + strand, within PS417_01730 at 384.726 kb on - strand, within PS417_01730 at 385.032 kb on - strand at 385.032 kb on - strand at 385.104 kb on + strand at 385.177 kb on + strand at 385.177 kb on + strand at 385.178 kb on - strand at 385.178 kb on - strand at 385.352 kb on + strand, within PS417_01735 at 385.352 kb on + strand, within PS417_01735 at 385.352 kb on + strand, within PS417_01735 at 385.528 kb on + strand, within PS417_01735 at 385.594 kb on + strand, within PS417_01735 at 385.925 kb on - strand at 385.958 kb on + strand at 385.958 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 383,223 - PS417_01725 0.47 +1.1 383,363 + PS417_01725 0.56 -0.9 383,364 - PS417_01725 0.56 +0.9 383,364 - PS417_01725 0.56 -0.4 383,408 + PS417_01725 0.59 -0.4 383,409 - PS417_01725 0.60 -0.3 383,456 + PS417_01725 0.63 +1.1 383,672 + PS417_01725 0.78 -0.3 383,672 + PS417_01725 0.78 +0.2 383,766 - +2.0 383,813 + PS417_01725 0.87 -0.9 383,851 + PS417_01725 0.90 -2.8 383,891 + -1.6 383,891 + -1.3 383,892 - +0.4 383,894 + -0.3 383,894 + -2.5 383,895 - -0.1 383,895 - +0.5 383,965 - -0.2 384,037 - +0.5 384,079 + -1.3 384,080 - -0.3 384,080 - -0.2 384,243 - PS417_01730 0.18 -0.1 384,310 + PS417_01730 0.25 -0.6 384,425 + PS417_01730 0.37 -0.8 384,425 + PS417_01730 0.37 -1.3 384,425 + PS417_01730 0.37 -1.2 384,437 + PS417_01730 0.38 -0.9 384,438 - PS417_01730 0.38 +0.2 384,497 - PS417_01730 0.44 +0.8 384,515 + PS417_01730 0.46 -0.7 384,516 - PS417_01730 0.46 -0.6 384,516 - PS417_01730 0.46 -0.2 384,563 + PS417_01730 0.51 -1.2 384,563 + PS417_01730 0.51 -1.0 384,639 - +0.1 384,639 - PS417_01730 0.59 -2.4 384,695 + PS417_01730 0.65 -0.4 384,695 + PS417_01730 0.65 -0.8 384,695 + PS417_01730 0.65 -0.3 384,725 + PS417_01730 0.68 -1.4 384,726 - PS417_01730 0.68 +0.2 385,032 - +0.3 385,032 - +0.3 385,104 + -0.3 385,177 + -0.4 385,177 + -0.8 385,178 - -0.1 385,178 - +2.0 385,352 + PS417_01735 0.29 -0.9 385,352 + PS417_01735 0.29 +0.0 385,352 + PS417_01735 0.29 -1.3 385,528 + PS417_01735 0.50 -0.5 385,594 + PS417_01735 0.57 -0.7 385,925 - +0.3 385,958 + -0.5 385,958 + -2.1
Or see this region's nucleotide sequence