Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17310 and PS417_17315 are separated by 158 nucleotides PS417_17315 and PS417_17320 are separated by 591 nucleotides
PS417_17310: PS417_17310 - allantoate amidohydrolase, at 3,780,501 to 3,781,784
_17310
PS417_17315: PS417_17315 - nitrate reductase, at 3,781,943 to 3,783,430
_17315
PS417_17320: PS417_17320 - phenylhydantoinase, at 3,784,022 to 3,785,461
_17320
Position (kb)
3781
3782
3783
3784 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 3781.202 kb on - strand, within PS417_17310 at 3781.215 kb on - strand, within PS417_17310 at 3781.417 kb on - strand, within PS417_17310 at 3781.569 kb on - strand, within PS417_17310 at 3781.620 kb on + strand, within PS417_17310 at 3781.620 kb on + strand, within PS417_17310 at 3781.801 kb on + strand at 3781.883 kb on + strand at 3781.944 kb on + strand at 3782.001 kb on + strand at 3782.040 kb on + strand at 3782.041 kb on - strand at 3782.041 kb on - strand at 3782.046 kb on + strand at 3782.046 kb on + strand at 3782.046 kb on + strand at 3782.047 kb on - strand at 3782.154 kb on + strand, within PS417_17315 at 3782.262 kb on + strand, within PS417_17315 at 3782.671 kb on + strand at 3782.671 kb on + strand, within PS417_17315 at 3782.672 kb on - strand, within PS417_17315 at 3782.686 kb on + strand, within PS417_17315 at 3782.885 kb on + strand, within PS417_17315 at 3782.886 kb on - strand, within PS417_17315 at 3782.886 kb on - strand, within PS417_17315 at 3782.886 kb on - strand, within PS417_17315 at 3783.219 kb on + strand, within PS417_17315 at 3783.244 kb on + strand, within PS417_17315 at 3783.246 kb on + strand, within PS417_17315 at 3783.246 kb on + strand at 3783.246 kb on + strand, within PS417_17315 at 3783.247 kb on - strand, within PS417_17315 at 3783.247 kb on - strand, within PS417_17315 at 3783.346 kb on - strand at 3783.387 kb on + strand at 3783.455 kb on + strand at 3783.496 kb on - strand at 3783.496 kb on - strand at 3783.981 kb on + strand at 3783.981 kb on + strand at 3784.101 kb on + strand at 3784.199 kb on - strand, within PS417_17320 at 3784.379 kb on + strand, within PS417_17320 at 3784.380 kb on - strand, within PS417_17320
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 3,781,202 - PS417_17310 0.55 +0.1 3,781,215 - PS417_17310 0.56 +0.7 3,781,417 - PS417_17310 0.71 -2.1 3,781,569 - PS417_17310 0.83 -0.2 3,781,620 + PS417_17310 0.87 -0.4 3,781,620 + PS417_17310 0.87 -0.1 3,781,801 + -0.4 3,781,883 + -0.4 3,781,944 + +0.9 3,782,001 + -0.5 3,782,040 + -0.5 3,782,041 - -0.6 3,782,041 - +1.2 3,782,046 + -0.9 3,782,046 + -1.1 3,782,046 + -0.8 3,782,047 - +0.6 3,782,154 + PS417_17315 0.14 +0.6 3,782,262 + PS417_17315 0.21 -0.7 3,782,671 + -1.7 3,782,671 + PS417_17315 0.49 -0.8 3,782,672 - PS417_17315 0.49 -0.9 3,782,686 + PS417_17315 0.50 -0.4 3,782,885 + PS417_17315 0.63 +0.6 3,782,886 - PS417_17315 0.63 -0.3 3,782,886 - PS417_17315 0.63 -0.4 3,782,886 - PS417_17315 0.63 -1.2 3,783,219 + PS417_17315 0.86 -0.9 3,783,244 + PS417_17315 0.87 -0.4 3,783,246 + PS417_17315 0.88 +0.2 3,783,246 + +1.2 3,783,246 + PS417_17315 0.88 -0.6 3,783,247 - PS417_17315 0.88 -1.1 3,783,247 - PS417_17315 0.88 -1.7 3,783,346 - -1.3 3,783,387 + -1.2 3,783,455 + -0.3 3,783,496 - -0.8 3,783,496 - -2.2 3,783,981 + -5.0 3,783,981 + -3.4 3,784,101 + -3.5 3,784,199 - PS417_17320 0.12 -5.9 3,784,379 + PS417_17320 0.25 -4.8 3,784,380 - PS417_17320 0.25 -0.2
Or see this region's nucleotide sequence