Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08910 and PS417_08915 overlap by 1 nucleotides PS417_08915 and PS417_08920 are separated by 416 nucleotides
PS417_08910: PS417_08910 - succinyl-CoA synthetase subunit beta, at 1,940,489 to 1,941,655
_08910
PS417_08915: PS417_08915 - succinyl-CoA synthetase subunit alpha, at 1,941,655 to 1,942,536
_08915
PS417_08920: PS417_08920 - branched-chain amino acid ABC transporter substrate-binding protein, at 1,942,953 to 1,944,266
_08920
Position (kb)
1941
1942
1943 Strain fitness (log2 ratio)
-1
0
1 at 1942.616 kb on + strand at 1942.616 kb on + strand at 1942.617 kb on - strand at 1942.617 kb on - strand at 1942.617 kb on - strand at 1942.663 kb on + strand at 1942.677 kb on - strand at 1942.677 kb on - strand at 1942.748 kb on + strand at 1942.890 kb on - strand at 1942.890 kb on - strand at 1942.934 kb on + strand at 1942.934 kb on + strand at 1942.934 kb on + strand at 1942.935 kb on - strand at 1942.935 kb on - strand at 1942.994 kb on + strand at 1942.995 kb on - strand at 1943.218 kb on - strand, within PS417_08920 at 1943.323 kb on - strand, within PS417_08920 at 1943.389 kb on + strand, within PS417_08920 at 1943.390 kb on - strand, within PS417_08920 at 1943.490 kb on + strand, within PS417_08920 at 1943.490 kb on + strand, within PS417_08920
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 1,942,616 + -0.6 1,942,616 + -0.4 1,942,617 - -0.1 1,942,617 - +0.9 1,942,617 - +0.1 1,942,663 + +1.2 1,942,677 - -0.2 1,942,677 - -0.1 1,942,748 + -0.2 1,942,890 - +0.2 1,942,890 - +0.1 1,942,934 + -1.1 1,942,934 + -0.9 1,942,934 + +0.0 1,942,935 - -0.4 1,942,935 - -0.5 1,942,994 + -1.3 1,942,995 - -0.1 1,943,218 - PS417_08920 0.20 +0.1 1,943,323 - PS417_08920 0.28 -0.9 1,943,389 + PS417_08920 0.33 -0.0 1,943,390 - PS417_08920 0.33 -1.4 1,943,490 + PS417_08920 0.41 -0.6 1,943,490 + PS417_08920 0.41 -0.2
Or see this region's nucleotide sequence