Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS14485

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS14470 and RPSI07_RS14475 are separated by 32 nucleotidesRPSI07_RS14475 and RPSI07_RS14480 are separated by 10 nucleotidesRPSI07_RS14480 and RPSI07_RS14485 are separated by 10 nucleotidesRPSI07_RS14485 and RPSI07_RS14490 are separated by 2 nucleotidesRPSI07_RS14490 and RPSI07_RS14495 overlap by 50 nucleotides RPSI07_RS14470: RPSI07_RS14470 - urease subunit gamma, at 1,428,009 to 1,428,311 _RS14470 RPSI07_RS14475: RPSI07_RS14475 - urease accessory protein UreJ, at 1,428,344 to 1,428,961 _RS14475 RPSI07_RS14480: RPSI07_RS14480 - urease subunit beta, at 1,428,972 to 1,429,277 _RS14480 RPSI07_RS14485: RPSI07_RS14485 - urease subunit alpha, at 1,429,288 to 1,431,006 _RS14485 RPSI07_RS14490: RPSI07_RS14490 - urease accessory protein UreE, at 1,431,009 to 1,431,632 _RS14490 RPSI07_RS14495: RPSI07_RS14495 - urease accessory protein UreF, at 1,431,583 to 1,432,314 _RS14495 Position (kb) 1429 1430 1431 1432Strain fitness (log2 ratio) -2 -1 0 1 2at 1428.443 kb on - strand, within RPSI07_RS14475at 1428.759 kb on - strand, within RPSI07_RS14475at 1428.929 kb on + strandat 1428.929 kb on + strandat 1428.930 kb on - strandat 1429.090 kb on - strand, within RPSI07_RS14480at 1429.098 kb on + strand, within RPSI07_RS14480at 1429.098 kb on + strand, within RPSI07_RS14480at 1429.099 kb on - strand, within RPSI07_RS14480at 1429.158 kb on - strand, within RPSI07_RS14480at 1429.243 kb on - strand, within RPSI07_RS14480at 1429.405 kb on + strandat 1429.406 kb on - strandat 1429.692 kb on + strand, within RPSI07_RS14485at 1429.692 kb on + strand, within RPSI07_RS14485at 1429.786 kb on + strand, within RPSI07_RS14485at 1429.786 kb on + strand, within RPSI07_RS14485at 1429.786 kb on + strand, within RPSI07_RS14485at 1429.786 kb on + strand, within RPSI07_RS14485at 1429.786 kb on + strand, within RPSI07_RS14485at 1429.786 kb on + strand, within RPSI07_RS14485at 1429.787 kb on - strand, within RPSI07_RS14485at 1429.787 kb on - strand, within RPSI07_RS14485at 1429.816 kb on + strand, within RPSI07_RS14485at 1429.816 kb on + strand, within RPSI07_RS14485at 1429.817 kb on - strand, within RPSI07_RS14485at 1429.849 kb on + strand, within RPSI07_RS14485at 1429.989 kb on - strand, within RPSI07_RS14485at 1430.097 kb on + strand, within RPSI07_RS14485at 1430.097 kb on + strand, within RPSI07_RS14485at 1430.097 kb on + strand, within RPSI07_RS14485at 1430.097 kb on + strand, within RPSI07_RS14485at 1430.097 kb on + strand, within RPSI07_RS14485at 1430.097 kb on + strand, within RPSI07_RS14485at 1430.098 kb on - strand, within RPSI07_RS14485at 1430.098 kb on - strand, within RPSI07_RS14485at 1430.098 kb on - strand, within RPSI07_RS14485at 1430.098 kb on - strand, within RPSI07_RS14485at 1430.098 kb on - strand, within RPSI07_RS14485at 1430.098 kb on - strand, within RPSI07_RS14485at 1430.098 kb on - strand, within RPSI07_RS14485at 1430.098 kb on - strand, within RPSI07_RS14485at 1430.098 kb on - strand, within RPSI07_RS14485at 1430.098 kb on - strand, within RPSI07_RS14485at 1430.098 kb on - strand, within RPSI07_RS14485at 1430.098 kb on - strand, within RPSI07_RS14485at 1430.101 kb on + strand, within RPSI07_RS14485at 1430.101 kb on + strand, within RPSI07_RS14485at 1430.101 kb on + strand, within RPSI07_RS14485at 1430.102 kb on - strand, within RPSI07_RS14485at 1430.439 kb on - strand, within RPSI07_RS14485at 1430.509 kb on + strand, within RPSI07_RS14485at 1430.510 kb on - strand, within RPSI07_RS14485at 1430.521 kb on + strand, within RPSI07_RS14485at 1430.522 kb on - strand, within RPSI07_RS14485at 1430.720 kb on - strand, within RPSI07_RS14485at 1430.815 kb on + strand, within RPSI07_RS14485at 1430.815 kb on + strand, within RPSI07_RS14485at 1430.815 kb on + strand, within RPSI07_RS14485at 1430.816 kb on - strand, within RPSI07_RS14485at 1430.816 kb on - strand, within RPSI07_RS14485at 1430.816 kb on - strand, within RPSI07_RS14485at 1430.816 kb on - strand, within RPSI07_RS14485at 1430.923 kb on + strandat 1430.923 kb on + strandat 1430.924 kb on - strandat 1430.993 kb on - strandat 1431.024 kb on - strandat 1431.295 kb on - strand, within RPSI07_RS14490at 1431.295 kb on - strand, within RPSI07_RS14490at 1431.295 kb on - strand, within RPSI07_RS14490at 1431.315 kb on - strand, within RPSI07_RS14490at 1431.315 kb on - strand, within RPSI07_RS14490at 1431.442 kb on - strand, within RPSI07_RS14490at 1431.489 kb on + strand, within RPSI07_RS14490at 1431.490 kb on - strand, within RPSI07_RS14490at 1431.511 kb on - strand, within RPSI07_RS14490at 1431.631 kb on - strandat 1431.697 kb on + strand, within RPSI07_RS14495at 1431.697 kb on + strand, within RPSI07_RS14495at 1431.697 kb on + strand, within RPSI07_RS14495

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
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1,428,443 - RPSI07_RS14475 0.16 -0.7
1,428,759 - RPSI07_RS14475 0.67 -0.9
1,428,929 + -0.5
1,428,929 + -0.3
1,428,930 - -0.9
1,429,090 - RPSI07_RS14480 0.39 +1.6
1,429,098 + RPSI07_RS14480 0.41 +0.9
1,429,098 + RPSI07_RS14480 0.41 +0.1
1,429,099 - RPSI07_RS14480 0.42 +0.7
1,429,158 - RPSI07_RS14480 0.61 -0.5
1,429,243 - RPSI07_RS14480 0.89 +0.3
1,429,405 + -2.2
1,429,406 - -0.4
1,429,692 + RPSI07_RS14485 0.24 -0.4
1,429,692 + RPSI07_RS14485 0.24 +0.3
1,429,786 + RPSI07_RS14485 0.29 -1.4
1,429,786 + RPSI07_RS14485 0.29 -0.5
1,429,786 + RPSI07_RS14485 0.29 -0.2
1,429,786 + RPSI07_RS14485 0.29 +1.6
1,429,786 + RPSI07_RS14485 0.29 -1.0
1,429,786 + RPSI07_RS14485 0.29 -0.5
1,429,787 - RPSI07_RS14485 0.29 +0.6
1,429,787 - RPSI07_RS14485 0.29 -0.2
1,429,816 + RPSI07_RS14485 0.31 +0.1
1,429,816 + RPSI07_RS14485 0.31 +0.7
1,429,817 - RPSI07_RS14485 0.31 -0.8
1,429,849 + RPSI07_RS14485 0.33 +0.5
1,429,989 - RPSI07_RS14485 0.41 +0.5
1,430,097 + RPSI07_RS14485 0.47 +0.6
1,430,097 + RPSI07_RS14485 0.47 +0.6
1,430,097 + RPSI07_RS14485 0.47 +2.6
1,430,097 + RPSI07_RS14485 0.47 +0.6
1,430,097 + RPSI07_RS14485 0.47 +1.5
1,430,097 + RPSI07_RS14485 0.47 -0.4
1,430,098 - RPSI07_RS14485 0.47 +1.9
1,430,098 - RPSI07_RS14485 0.47 +0.2
1,430,098 - RPSI07_RS14485 0.47 -0.2
1,430,098 - RPSI07_RS14485 0.47 +2.1
1,430,098 - RPSI07_RS14485 0.47 -0.1
1,430,098 - RPSI07_RS14485 0.47 -2.0
1,430,098 - RPSI07_RS14485 0.47 +0.6
1,430,098 - RPSI07_RS14485 0.47 +1.4
1,430,098 - RPSI07_RS14485 0.47 +0.5
1,430,098 - RPSI07_RS14485 0.47 -0.6
1,430,098 - RPSI07_RS14485 0.47 +0.0
1,430,098 - RPSI07_RS14485 0.47 -0.4
1,430,101 + RPSI07_RS14485 0.47 +1.0
1,430,101 + RPSI07_RS14485 0.47 +0.5
1,430,101 + RPSI07_RS14485 0.47 +0.2
1,430,102 - RPSI07_RS14485 0.47 -0.7
1,430,439 - RPSI07_RS14485 0.67 +0.4
1,430,509 + RPSI07_RS14485 0.71 -0.6
1,430,510 - RPSI07_RS14485 0.71 -0.3
1,430,521 + RPSI07_RS14485 0.72 +0.6
1,430,522 - RPSI07_RS14485 0.72 -0.3
1,430,720 - RPSI07_RS14485 0.83 -0.5
1,430,815 + RPSI07_RS14485 0.89 +0.0
1,430,815 + RPSI07_RS14485 0.89 -0.1
1,430,815 + RPSI07_RS14485 0.89 -0.4
1,430,816 - RPSI07_RS14485 0.89 -0.5
1,430,816 - RPSI07_RS14485 0.89 -0.7
1,430,816 - RPSI07_RS14485 0.89 +1.0
1,430,816 - RPSI07_RS14485 0.89 +2.2
1,430,923 + -0.6
1,430,923 + +2.6
1,430,924 - +0.2
1,430,993 - -0.1
1,431,024 - -0.4
1,431,295 - RPSI07_RS14490 0.46 -0.1
1,431,295 - RPSI07_RS14490 0.46 -0.4
1,431,295 - RPSI07_RS14490 0.46 -0.3
1,431,315 - RPSI07_RS14490 0.49 -1.2
1,431,315 - RPSI07_RS14490 0.49 +0.9
1,431,442 - RPSI07_RS14490 0.69 -0.1
1,431,489 + RPSI07_RS14490 0.77 +1.6
1,431,490 - RPSI07_RS14490 0.77 +1.9
1,431,511 - RPSI07_RS14490 0.80 +0.0
1,431,631 - -0.4
1,431,697 + RPSI07_RS14495 0.16 +1.9
1,431,697 + RPSI07_RS14495 0.16 +2.2
1,431,697 + RPSI07_RS14495 0.16 -1.4

Or see this region's nucleotide sequence