Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS13680

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS13675 and RPSI07_RS13680 are separated by 147 nucleotidesRPSI07_RS13680 and RPSI07_RS13685 are separated by 83 nucleotidesRPSI07_RS13685 and RPSI07_RS13690 are separated by 180 nucleotides RPSI07_RS13675: RPSI07_RS13675 - oxygen-dependent coproporphyrinogen oxidase, at 1,258,314 to 1,259,222 _RS13675 RPSI07_RS13680: RPSI07_RS13680 - phosphoribosylamine--glycine ligase, at 1,259,370 to 1,260,638 _RS13680 RPSI07_RS13685: RPSI07_RS13685 - YebC/PmpR family DNA-binding transcriptional regulator, at 1,260,722 to 1,261,447 _RS13685 RPSI07_RS13690: RPSI07_RS13690 - DUF853 domain-containing protein, at 1,261,628 to 1,263,217 _RS13690 Position (kb) 1259 1260 1261Strain fitness (log2 ratio) -1 0 1 2at 1259.258 kb on - strandat 1259.274 kb on + strandat 1259.275 kb on - strandat 1260.645 kb on - strandat 1260.724 kb on - strandat 1260.748 kb on - strandat 1261.412 kb on - strandat 1261.528 kb on - strandat 1261.530 kb on - strandat 1261.622 kb on - strandat 1261.622 kb on - strandat 1261.622 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
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1,259,258 - +0.1
1,259,274 + -0.0
1,259,275 - +1.6
1,260,645 - -0.9
1,260,724 - +0.6
1,260,748 - +1.9
1,261,412 - +0.6
1,261,528 - +0.6
1,261,530 - +0.6
1,261,622 - -1.0
1,261,622 - +0.6
1,261,622 - +0.1

Or see this region's nucleotide sequence