Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS11470 and RPSI07_RS11475 are separated by 76 nucleotides RPSI07_RS11475 and RPSI07_RS11480 are separated by 67 nucleotides RPSI07_RS11480 and RPSI07_RS11485 are separated by 9 nucleotides
RPSI07_RS11470: RPSI07_RS11470 - DNA polymerase III subunit delta, at 770,001 to 771,077
_RS11470
RPSI07_RS11475: RPSI07_RS11475 - glutamate-5-semialdehyde dehydrogenase, at 771,154 to 772,434
_RS11475
RPSI07_RS11480: RPSI07_RS11480 - membrane protein, at 772,502 to 772,924
_RS11480
RPSI07_RS11485: RPSI07_RS11485 - class I SAM-dependent RNA methyltransferase, at 772,934 to 774,352
_RS11485
Position (kb) 771
772
773 Strain fitness (log2 ratio) -2
-1
0
1 at 771.178 kb on + strand at 771.178 kb on + strand at 771.859 kb on + strand, within RPSI07_RS11475 at 771.859 kb on + strand, within RPSI07_RS11475 at 771.859 kb on + strand, within RPSI07_RS11475 at 771.859 kb on + strand, within RPSI07_RS11475 at 771.859 kb on + strand, within RPSI07_RS11475 at 772.006 kb on + strand, within RPSI07_RS11475 at 772.117 kb on + strand, within RPSI07_RS11475 at 772.117 kb on + strand, within RPSI07_RS11475 at 772.186 kb on + strand, within RPSI07_RS11475 at 772.186 kb on + strand, within RPSI07_RS11475 at 772.186 kb on + strand, within RPSI07_RS11475 at 772.186 kb on + strand at 772.187 kb on - strand, within RPSI07_RS11475 at 772.187 kb on - strand, within RPSI07_RS11475 at 772.225 kb on + strand, within RPSI07_RS11475 at 772.225 kb on + strand, within RPSI07_RS11475 at 772.225 kb on + strand, within RPSI07_RS11475 at 772.225 kb on + strand, within RPSI07_RS11475 at 772.226 kb on - strand, within RPSI07_RS11475 at 772.400 kb on - strand at 772.400 kb on - strand at 773.100 kb on - strand, within RPSI07_RS11485 at 773.184 kb on - strand, within RPSI07_RS11485 at 773.184 kb on - strand, within RPSI07_RS11485 at 773.184 kb on - strand, within RPSI07_RS11485 at 773.216 kb on + strand, within RPSI07_RS11485 at 773.216 kb on + strand, within RPSI07_RS11485 at 773.217 kb on - strand, within RPSI07_RS11485 at 773.217 kb on - strand, within RPSI07_RS11485 at 773.311 kb on + strand, within RPSI07_RS11485 at 773.311 kb on + strand, within RPSI07_RS11485 at 773.312 kb on - strand, within RPSI07_RS11485 at 773.312 kb on - strand, within RPSI07_RS11485 at 773.312 kb on - strand, within RPSI07_RS11485 at 773.384 kb on + strand, within RPSI07_RS11485 at 773.384 kb on + strand, within RPSI07_RS11485 at 773.385 kb on - strand, within RPSI07_RS11485 at 773.418 kb on - strand, within RPSI07_RS11485
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days remove 771,178 + -0.6 771,178 + +1.1 771,859 + RPSI07_RS11475 0.55 -0.5 771,859 + RPSI07_RS11475 0.55 +0.6 771,859 + RPSI07_RS11475 0.55 -0.6 771,859 + RPSI07_RS11475 0.55 -0.4 771,859 + RPSI07_RS11475 0.55 +0.3 772,006 + RPSI07_RS11475 0.67 -0.6 772,117 + RPSI07_RS11475 0.75 +0.5 772,117 + RPSI07_RS11475 0.75 +1.1 772,186 + RPSI07_RS11475 0.81 +1.5 772,186 + RPSI07_RS11475 0.81 -1.2 772,186 + RPSI07_RS11475 0.81 -0.3 772,186 + +0.5 772,187 - RPSI07_RS11475 0.81 -0.2 772,187 - RPSI07_RS11475 0.81 -1.5 772,225 + RPSI07_RS11475 0.84 +0.4 772,225 + RPSI07_RS11475 0.84 +1.5 772,225 + RPSI07_RS11475 0.84 -0.6 772,225 + RPSI07_RS11475 0.84 -1.7 772,226 - RPSI07_RS11475 0.84 +0.5 772,400 - -1.5 772,400 - +1.5 773,100 - RPSI07_RS11485 0.12 -1.3 773,184 - RPSI07_RS11485 0.18 -0.1 773,184 - RPSI07_RS11485 0.18 -0.4 773,184 - RPSI07_RS11485 0.18 -1.1 773,216 + RPSI07_RS11485 0.20 -2.0 773,216 + RPSI07_RS11485 0.20 -0.3 773,217 - RPSI07_RS11485 0.20 +0.5 773,217 - RPSI07_RS11485 0.20 +0.3 773,311 + RPSI07_RS11485 0.27 -1.0 773,311 + RPSI07_RS11485 0.27 -2.5 773,312 - RPSI07_RS11485 0.27 -1.5 773,312 - RPSI07_RS11485 0.27 -1.0 773,312 - RPSI07_RS11485 0.27 -0.1 773,384 + RPSI07_RS11485 0.32 -1.0 773,384 + RPSI07_RS11485 0.32 -1.8 773,385 - RPSI07_RS11485 0.32 -1.0 773,418 - RPSI07_RS11485 0.34 +0.5
Or see this region's nucleotide sequence