Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS02390 and RPSI07_RS02395 overlap by 4 nucleotides RPSI07_RS02395 and RPSI07_RS02400 are separated by 174 nucleotides RPSI07_RS02400 and RPSI07_RS02405 are separated by 10 nucleotides
RPSI07_RS02390: RPSI07_RS02390 - efflux RND transporter periplasmic adaptor subunit, at 691,437 to 692,558
_RS02390
RPSI07_RS02395: RPSI07_RS02395 - membrane protein, at 692,555 to 694,003
_RS02395
RPSI07_RS02400: RPSI07_RS02400 - DNA-binding response regulator, at 694,178 to 694,873
_RS02400
RPSI07_RS02405: RPSI07_RS02405 - two-component sensor histidine kinase, at 694,884 to 695,975
_RS02405
Position (kb) 692
693
694
695 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 691.627 kb on + strand, within RPSI07_RS02390 at 691.627 kb on + strand, within RPSI07_RS02390 at 691.627 kb on + strand, within RPSI07_RS02390 at 691.627 kb on + strand, within RPSI07_RS02390 at 691.628 kb on - strand, within RPSI07_RS02390 at 691.628 kb on - strand, within RPSI07_RS02390 at 691.628 kb on - strand, within RPSI07_RS02390 at 691.628 kb on - strand, within RPSI07_RS02390 at 691.628 kb on - strand, within RPSI07_RS02390 at 691.628 kb on - strand, within RPSI07_RS02390 at 691.628 kb on - strand, within RPSI07_RS02390 at 691.628 kb on - strand, within RPSI07_RS02390 at 691.628 kb on - strand, within RPSI07_RS02390 at 691.654 kb on - strand, within RPSI07_RS02390 at 691.756 kb on + strand, within RPSI07_RS02390 at 691.756 kb on + strand, within RPSI07_RS02390 at 691.756 kb on + strand, within RPSI07_RS02390 at 691.756 kb on + strand, within RPSI07_RS02390 at 691.756 kb on + strand, within RPSI07_RS02390 at 691.756 kb on + strand, within RPSI07_RS02390 at 691.757 kb on - strand, within RPSI07_RS02390 at 691.757 kb on - strand, within RPSI07_RS02390 at 691.757 kb on - strand, within RPSI07_RS02390 at 691.757 kb on - strand, within RPSI07_RS02390 at 691.757 kb on - strand, within RPSI07_RS02390 at 691.757 kb on - strand, within RPSI07_RS02390 at 691.757 kb on - strand, within RPSI07_RS02390 at 691.757 kb on - strand, within RPSI07_RS02390 at 691.757 kb on - strand, within RPSI07_RS02390 at 691.776 kb on - strand, within RPSI07_RS02390 at 691.776 kb on - strand, within RPSI07_RS02390 at 692.563 kb on + strand at 692.564 kb on - strand at 692.564 kb on - strand at 692.564 kb on - strand at 692.564 kb on - strand at 692.564 kb on - strand at 692.631 kb on + strand at 692.631 kb on + strand at 692.631 kb on + strand at 692.631 kb on + strand at 692.631 kb on + strand at 692.631 kb on + strand at 692.632 kb on - strand at 692.632 kb on - strand at 692.723 kb on + strand, within RPSI07_RS02395 at 692.772 kb on + strand, within RPSI07_RS02395 at 692.773 kb on - strand, within RPSI07_RS02395 at 692.781 kb on + strand, within RPSI07_RS02395 at 692.782 kb on - strand, within RPSI07_RS02395 at 692.782 kb on - strand, within RPSI07_RS02395 at 692.782 kb on - strand, within RPSI07_RS02395 at 692.907 kb on + strand, within RPSI07_RS02395 at 693.090 kb on + strand, within RPSI07_RS02395 at 693.090 kb on + strand, within RPSI07_RS02395 at 693.090 kb on + strand, within RPSI07_RS02395 at 693.091 kb on - strand, within RPSI07_RS02395 at 693.091 kb on - strand, within RPSI07_RS02395 at 693.091 kb on - strand, within RPSI07_RS02395 at 693.426 kb on + strand, within RPSI07_RS02395 at 693.457 kb on - strand, within RPSI07_RS02395 at 693.465 kb on + strand, within RPSI07_RS02395 at 693.465 kb on + strand, within RPSI07_RS02395 at 693.465 kb on + strand, within RPSI07_RS02395 at 693.466 kb on - strand, within RPSI07_RS02395 at 693.466 kb on - strand, within RPSI07_RS02395 at 693.918 kb on + strand at 693.919 kb on - strand at 694.066 kb on + strand at 694.067 kb on - strand at 694.079 kb on - strand at 694.098 kb on + strand at 694.144 kb on + strand at 694.144 kb on + strand at 694.145 kb on - strand at 694.145 kb on - strand at 694.235 kb on + strand at 694.235 kb on + strand at 694.235 kb on + strand at 694.235 kb on + strand at 694.236 kb on - strand at 694.236 kb on - strand at 694.375 kb on + strand, within RPSI07_RS02400 at 694.469 kb on + strand, within RPSI07_RS02400 at 694.469 kb on + strand, within RPSI07_RS02400 at 694.469 kb on + strand, within RPSI07_RS02400 at 694.469 kb on + strand, within RPSI07_RS02400 at 694.469 kb on + strand, within RPSI07_RS02400 at 694.469 kb on + strand, within RPSI07_RS02400 at 694.469 kb on + strand, within RPSI07_RS02400 at 694.470 kb on - strand, within RPSI07_RS02400 at 694.470 kb on - strand, within RPSI07_RS02400 at 694.470 kb on - strand, within RPSI07_RS02400 at 694.473 kb on + strand, within RPSI07_RS02400 at 694.473 kb on + strand, within RPSI07_RS02400 at 694.474 kb on - strand, within RPSI07_RS02400 at 694.474 kb on - strand, within RPSI07_RS02400 at 694.474 kb on - strand, within RPSI07_RS02400 at 694.474 kb on - strand, within RPSI07_RS02400 at 694.474 kb on - strand, within RPSI07_RS02400 at 694.854 kb on - strand at 694.871 kb on + strand at 694.872 kb on - strand at 694.872 kb on - strand at 694.872 kb on - strand at 694.971 kb on + strand at 694.972 kb on - strand at 694.972 kb on - strand at 694.972 kb on - strand at 694.972 kb on - strand at 694.973 kb on + strand at 694.973 kb on + strand at 694.973 kb on + strand at 694.973 kb on + strand at 694.973 kb on + strand at 694.973 kb on + strand at 694.973 kb on + strand at 694.973 kb on + strand at 694.973 kb on + strand at 694.973 kb on + strand at 694.973 kb on + strand at 694.973 kb on + strand at 694.973 kb on + strand at 694.973 kb on + strand at 694.974 kb on - strand at 694.974 kb on - strand at 694.974 kb on - strand at 694.974 kb on - strand at 694.974 kb on - strand at 694.974 kb on - strand at 694.974 kb on - strand at 694.974 kb on - strand at 694.974 kb on - strand at 694.974 kb on - strand at 694.974 kb on - strand at 694.974 kb on - strand at 694.974 kb on - strand at 694.974 kb on - strand at 694.974 kb on - strand at 694.974 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days remove 691,627 + RPSI07_RS02390 0.17 +0.8 691,627 + RPSI07_RS02390 0.17 +0.5 691,627 + RPSI07_RS02390 0.17 -0.6 691,627 + RPSI07_RS02390 0.17 +1.4 691,628 - RPSI07_RS02390 0.17 +0.8 691,628 - RPSI07_RS02390 0.17 -0.4 691,628 - RPSI07_RS02390 0.17 -0.1 691,628 - RPSI07_RS02390 0.17 +0.1 691,628 - RPSI07_RS02390 0.17 -0.8 691,628 - RPSI07_RS02390 0.17 -0.1 691,628 - RPSI07_RS02390 0.17 +0.8 691,628 - RPSI07_RS02390 0.17 -0.6 691,628 - RPSI07_RS02390 0.17 +0.0 691,654 - RPSI07_RS02390 0.19 +0.8 691,756 + RPSI07_RS02390 0.28 -1.2 691,756 + RPSI07_RS02390 0.28 -0.2 691,756 + RPSI07_RS02390 0.28 +0.8 691,756 + RPSI07_RS02390 0.28 +1.4 691,756 + RPSI07_RS02390 0.28 -0.9 691,756 + RPSI07_RS02390 0.28 -1.0 691,757 - RPSI07_RS02390 0.29 +0.0 691,757 - RPSI07_RS02390 0.29 -2.1 691,757 - RPSI07_RS02390 0.29 -0.1 691,757 - RPSI07_RS02390 0.29 +0.8 691,757 - RPSI07_RS02390 0.29 +1.1 691,757 - RPSI07_RS02390 0.29 -1.0 691,757 - RPSI07_RS02390 0.29 -0.3 691,757 - RPSI07_RS02390 0.29 +0.8 691,757 - RPSI07_RS02390 0.29 -0.5 691,776 - RPSI07_RS02390 0.30 +0.3 691,776 - RPSI07_RS02390 0.30 -0.6 692,563 + -1.2 692,564 - -1.8 692,564 - -1.1 692,564 - -1.0 692,564 - +0.3 692,564 - -0.8 692,631 + -1.3 692,631 + -0.8 692,631 + +0.9 692,631 + -0.1 692,631 + +1.0 692,631 + +0.2 692,632 - +2.4 692,632 - +0.2 692,723 + RPSI07_RS02395 0.12 +0.5 692,772 + RPSI07_RS02395 0.15 -0.6 692,773 - RPSI07_RS02395 0.15 -0.6 692,781 + RPSI07_RS02395 0.16 -0.5 692,782 - RPSI07_RS02395 0.16 -2.8 692,782 - RPSI07_RS02395 0.16 +0.6 692,782 - RPSI07_RS02395 0.16 -0.0 692,907 + RPSI07_RS02395 0.24 -0.0 693,090 + RPSI07_RS02395 0.37 -0.9 693,090 + RPSI07_RS02395 0.37 -0.0 693,090 + RPSI07_RS02395 0.37 -0.4 693,091 - RPSI07_RS02395 0.37 +0.1 693,091 - RPSI07_RS02395 0.37 -0.2 693,091 - RPSI07_RS02395 0.37 -0.2 693,426 + RPSI07_RS02395 0.60 -1.0 693,457 - RPSI07_RS02395 0.62 +1.0 693,465 + RPSI07_RS02395 0.63 -0.4 693,465 + RPSI07_RS02395 0.63 -0.9 693,465 + RPSI07_RS02395 0.63 -0.3 693,466 - RPSI07_RS02395 0.63 +0.4 693,466 - RPSI07_RS02395 0.63 +0.2 693,918 + +0.1 693,919 - -0.0 694,066 + -0.1 694,067 - -0.2 694,079 - +0.8 694,098 + +0.0 694,144 + +2.3 694,144 + +0.1 694,145 - +0.8 694,145 - -0.3 694,235 + +0.9 694,235 + -0.6 694,235 + -0.8 694,235 + -1.1 694,236 - -0.6 694,236 - +1.1 694,375 + RPSI07_RS02400 0.28 -1.0 694,469 + RPSI07_RS02400 0.42 -1.6 694,469 + RPSI07_RS02400 0.42 +2.8 694,469 + RPSI07_RS02400 0.42 +0.6 694,469 + RPSI07_RS02400 0.42 -0.4 694,469 + RPSI07_RS02400 0.42 -0.9 694,469 + RPSI07_RS02400 0.42 +1.3 694,469 + RPSI07_RS02400 0.42 -1.5 694,470 - RPSI07_RS02400 0.42 +0.2 694,470 - RPSI07_RS02400 0.42 +0.1 694,470 - RPSI07_RS02400 0.42 +0.1 694,473 + RPSI07_RS02400 0.42 -0.5 694,473 + RPSI07_RS02400 0.42 +0.1 694,474 - RPSI07_RS02400 0.43 +0.2 694,474 - RPSI07_RS02400 0.43 +0.1 694,474 - RPSI07_RS02400 0.43 -2.3 694,474 - RPSI07_RS02400 0.43 -0.4 694,474 - RPSI07_RS02400 0.43 -1.1 694,854 - +0.3 694,871 + +0.5 694,872 - +0.8 694,872 - -1.8 694,872 - +0.1 694,971 + -0.1 694,972 - +0.5 694,972 - +0.8 694,972 - +0.4 694,972 - +0.0 694,973 + +0.8 694,973 + +0.1 694,973 + +0.2 694,973 + -0.1 694,973 + -1.2 694,973 + +0.0 694,973 + -0.0 694,973 + +2.1 694,973 + +0.1 694,973 + -1.4 694,973 + -0.6 694,973 + +1.6 694,973 + +0.6 694,973 + +1.8 694,974 - +0.4 694,974 - -0.9 694,974 - -0.1 694,974 - +0.3 694,974 - -0.9 694,974 - +0.8 694,974 - -1.4 694,974 - -0.2 694,974 - -0.2 694,974 - -1.0 694,974 - +1.7 694,974 - -0.0 694,974 - +0.6 694,974 - +0.5 694,974 - -0.0 694,974 - -0.5
Or see this region's nucleotide sequence