Experiment: Vanillin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0404 and PP_0405 are separated by 130 nucleotides PP_0405 and PP_0406 overlap by 4 nucleotides PP_0406 and PP_0407 are separated by 1 nucleotides
PP_0404: PP_0404 - LPS-assembly protein LptD, at 489,598 to 492,420
_0404
PP_0405: PP_0405 - conserved protein of unknown function, at 492,551 to 493,570
_0405
PP_0406: PP_0406 - Nucleotidyltransferase family protein, at 493,567 to 494,238
_0406
PP_0407: PP_0407 - DnaJ-like protein DjlA, at 494,240 to 495,007
_0407
Position (kb) 492
493
494 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 492.506 kb on - strand at 492.567 kb on + strand at 492.567 kb on + strand at 492.567 kb on + strand at 492.567 kb on + strand at 492.568 kb on - strand at 492.568 kb on - strand at 492.568 kb on - strand at 492.568 kb on - strand at 492.693 kb on - strand, within PP_0405 at 492.804 kb on + strand, within PP_0405 at 492.804 kb on + strand, within PP_0405 at 492.804 kb on + strand, within PP_0405 at 492.804 kb on + strand, within PP_0405 at 492.804 kb on + strand, within PP_0405 at 492.804 kb on + strand, within PP_0405 at 492.804 kb on + strand, within PP_0405 at 492.804 kb on + strand, within PP_0405 at 492.804 kb on + strand, within PP_0405 at 492.804 kb on + strand, within PP_0405 at 492.804 kb on + strand, within PP_0405 at 492.805 kb on - strand, within PP_0405 at 492.805 kb on - strand, within PP_0405 at 492.805 kb on - strand, within PP_0405 at 492.805 kb on - strand, within PP_0405 at 492.805 kb on - strand, within PP_0405 at 492.878 kb on + strand, within PP_0405 at 492.878 kb on + strand, within PP_0405 at 492.878 kb on + strand, within PP_0405 at 492.878 kb on + strand, within PP_0405 at 492.878 kb on + strand, within PP_0405 at 492.879 kb on - strand, within PP_0405 at 492.879 kb on - strand, within PP_0405 at 492.983 kb on + strand, within PP_0405 at 492.984 kb on - strand, within PP_0405 at 492.984 kb on - strand, within PP_0405 at 493.031 kb on + strand, within PP_0405 at 493.032 kb on - strand, within PP_0405 at 493.032 kb on - strand, within PP_0405 at 493.141 kb on - strand, within PP_0405 at 493.141 kb on - strand at 493.141 kb on - strand, within PP_0405 at 493.141 kb on - strand, within PP_0405 at 493.141 kb on - strand, within PP_0405 at 493.141 kb on - strand, within PP_0405 at 493.151 kb on + strand, within PP_0405 at 493.151 kb on + strand, within PP_0405 at 493.152 kb on - strand, within PP_0405 at 493.152 kb on - strand, within PP_0405 at 493.216 kb on - strand, within PP_0405 at 493.217 kb on + strand, within PP_0405 at 493.217 kb on + strand, within PP_0405 at 493.232 kb on + strand, within PP_0405 at 493.232 kb on + strand, within PP_0405 at 493.233 kb on - strand, within PP_0405 at 493.240 kb on + strand, within PP_0405 at 493.240 kb on + strand, within PP_0405 at 493.240 kb on + strand, within PP_0405 at 493.240 kb on + strand, within PP_0405 at 493.240 kb on + strand, within PP_0405 at 493.240 kb on + strand, within PP_0405 at 493.241 kb on - strand, within PP_0405 at 493.241 kb on - strand, within PP_0405 at 493.454 kb on + strand, within PP_0405 at 493.455 kb on - strand, within PP_0405 at 493.484 kb on + strand at 493.485 kb on - strand at 493.485 kb on - strand at 493.486 kb on + strand at 493.487 kb on - strand at 493.487 kb on - strand at 493.488 kb on + strand at 493.488 kb on + strand at 493.488 kb on + strand at 493.489 kb on - strand at 493.489 kb on - strand at 493.489 kb on - strand at 493.489 kb on - strand at 493.489 kb on - strand at 493.489 kb on - strand at 493.673 kb on - strand, within PP_0406 at 493.901 kb on - strand, within PP_0406 at 494.147 kb on + strand, within PP_0406 at 494.148 kb on - strand, within PP_0406 at 494.161 kb on + strand, within PP_0406 at 494.161 kb on + strand, within PP_0406 at 494.162 kb on - strand, within PP_0406 at 494.162 kb on - strand, within PP_0406 at 494.162 kb on - strand, within PP_0406 at 494.473 kb on + strand, within PP_0407 at 494.473 kb on + strand, within PP_0407
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin (C) remove 492,506 - +1.6 492,567 + -1.0 492,567 + -0.6 492,567 + -3.4 492,567 + -1.3 492,568 - -0.6 492,568 - -1.0 492,568 - -0.7 492,568 - +0.4 492,693 - PP_0405 0.14 -0.4 492,804 + PP_0405 0.25 +2.7 492,804 + PP_0405 0.25 -0.9 492,804 + PP_0405 0.25 -0.2 492,804 + PP_0405 0.25 +2.0 492,804 + PP_0405 0.25 -0.5 492,804 + PP_0405 0.25 -0.5 492,804 + PP_0405 0.25 -0.8 492,804 + PP_0405 0.25 -0.9 492,804 + PP_0405 0.25 -2.2 492,804 + PP_0405 0.25 +0.0 492,804 + PP_0405 0.25 -1.0 492,805 - PP_0405 0.25 -2.8 492,805 - PP_0405 0.25 -0.5 492,805 - PP_0405 0.25 -0.2 492,805 - PP_0405 0.25 -1.4 492,805 - PP_0405 0.25 -1.6 492,878 + PP_0405 0.32 -0.6 492,878 + PP_0405 0.32 -0.8 492,878 + PP_0405 0.32 +1.4 492,878 + PP_0405 0.32 -1.1 492,878 + PP_0405 0.32 -0.0 492,879 - PP_0405 0.32 +0.1 492,879 - PP_0405 0.32 +0.0 492,983 + PP_0405 0.42 -2.0 492,984 - PP_0405 0.42 -0.7 492,984 - PP_0405 0.42 -0.2 493,031 + PP_0405 0.47 -1.2 493,032 - PP_0405 0.47 -0.0 493,032 - PP_0405 0.47 +0.6 493,141 - PP_0405 0.58 +0.8 493,141 - +0.4 493,141 - PP_0405 0.58 -1.3 493,141 - PP_0405 0.58 +0.1 493,141 - PP_0405 0.58 +0.7 493,141 - PP_0405 0.58 -0.6 493,151 + PP_0405 0.59 +1.0 493,151 + PP_0405 0.59 -1.2 493,152 - PP_0405 0.59 +0.7 493,152 - PP_0405 0.59 -1.8 493,216 - PP_0405 0.65 -1.0 493,217 + PP_0405 0.65 +1.4 493,217 + PP_0405 0.65 -0.5 493,232 + PP_0405 0.67 +0.1 493,232 + PP_0405 0.67 -1.3 493,233 - PP_0405 0.67 +0.5 493,240 + PP_0405 0.68 -0.6 493,240 + PP_0405 0.68 -0.7 493,240 + PP_0405 0.68 -0.5 493,240 + PP_0405 0.68 -0.9 493,240 + PP_0405 0.68 -0.1 493,240 + PP_0405 0.68 +0.6 493,241 - PP_0405 0.68 -0.5 493,241 - PP_0405 0.68 -1.5 493,454 + PP_0405 0.89 +0.3 493,455 - PP_0405 0.89 -1.5 493,484 + -1.4 493,485 - -0.7 493,485 - +0.3 493,486 + -0.7 493,487 - +0.4 493,487 - +1.2 493,488 + -0.6 493,488 + -0.0 493,488 + +1.6 493,489 - -1.5 493,489 - -0.3 493,489 - -1.3 493,489 - -0.7 493,489 - +0.1 493,489 - -0.2 493,673 - PP_0406 0.16 -1.9 493,901 - PP_0406 0.50 -2.0 494,147 + PP_0406 0.86 -1.6 494,148 - PP_0406 0.86 -1.8 494,161 + PP_0406 0.88 -2.2 494,161 + PP_0406 0.88 -3.6 494,162 - PP_0406 0.89 -0.3 494,162 - PP_0406 0.89 -3.2 494,162 - PP_0406 0.89 -3.6 494,473 + PP_0407 0.30 +0.2 494,473 + PP_0407 0.30 +0.3
Or see this region's nucleotide sequence