Experiment: Vanillin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0256 and PP_0257 are separated by 5 nucleotides PP_0257 and PP_0258 are separated by 175 nucleotides PP_0258 and PP_0259 are separated by 50 nucleotides
PP_0256: PP_0256 - putative oxidoreductase, at 310,030 to 312,375
_0256
PP_0257: PP_0257 - protein sulfur transferase, at 312,381 to 313,211
_0257
PP_0258: PP_0258 - regulator of murein cross-linking, at 313,387 to 313,827
_0258
PP_0259: PP_0259 - purine nucleotidase, at 313,878 to 314,540
_0259
Position (kb) 312
313
314 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 311.740 kb on - strand, within PP_0256 at 311.828 kb on + strand, within PP_0256 at 311.850 kb on - strand, within PP_0256 at 311.850 kb on - strand, within PP_0256 at 311.850 kb on - strand, within PP_0256 at 311.855 kb on + strand, within PP_0256 at 311.856 kb on - strand, within PP_0256 at 311.856 kb on - strand, within PP_0256 at 311.889 kb on - strand, within PP_0256 at 311.889 kb on - strand, within PP_0256 at 312.023 kb on + strand, within PP_0256 at 312.105 kb on + strand, within PP_0256 at 312.106 kb on - strand, within PP_0256 at 312.250 kb on - strand at 312.250 kb on - strand at 312.279 kb on + strand at 312.280 kb on - strand at 312.314 kb on + strand at 312.314 kb on + strand at 312.323 kb on + strand at 312.324 kb on - strand at 312.382 kb on + strand at 312.383 kb on - strand at 312.404 kb on - strand at 312.404 kb on - strand at 312.437 kb on + strand at 312.925 kb on + strand, within PP_0257 at 312.926 kb on - strand, within PP_0257 at 312.926 kb on - strand, within PP_0257 at 312.926 kb on - strand, within PP_0257 at 313.069 kb on + strand, within PP_0257 at 313.069 kb on + strand, within PP_0257 at 313.069 kb on + strand, within PP_0257 at 313.069 kb on + strand, within PP_0257 at 313.070 kb on - strand, within PP_0257 at 313.070 kb on - strand, within PP_0257 at 313.139 kb on - strand at 313.144 kb on + strand at 313.144 kb on + strand at 313.145 kb on - strand at 313.145 kb on - strand at 313.241 kb on + strand at 313.289 kb on + strand at 313.290 kb on - strand at 313.299 kb on + strand at 313.300 kb on - strand at 313.300 kb on - strand at 313.336 kb on - strand at 313.472 kb on + strand, within PP_0258 at 313.472 kb on + strand, within PP_0258 at 313.473 kb on - strand at 313.527 kb on - strand, within PP_0258 at 313.723 kb on + strand, within PP_0258 at 313.724 kb on - strand, within PP_0258 at 313.741 kb on + strand, within PP_0258 at 313.742 kb on - strand, within PP_0258 at 313.841 kb on + strand at 313.841 kb on + strand at 313.879 kb on + strand at 313.880 kb on - strand at 313.887 kb on + strand at 313.893 kb on + strand at 314.110 kb on + strand, within PP_0259 at 314.110 kb on + strand, within PP_0259 at 314.111 kb on - strand, within PP_0259 at 314.140 kb on + strand, within PP_0259 at 314.140 kb on + strand, within PP_0259 at 314.140 kb on + strand, within PP_0259 at 314.140 kb on + strand, within PP_0259 at 314.141 kb on - strand, within PP_0259 at 314.141 kb on - strand, within PP_0259 at 314.141 kb on - strand, within PP_0259
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin (C) remove 311,740 - PP_0256 0.73 -2.3 311,828 + PP_0256 0.77 +0.1 311,850 - PP_0256 0.78 -0.7 311,850 - PP_0256 0.78 -0.6 311,850 - PP_0256 0.78 -0.3 311,855 + PP_0256 0.78 -0.4 311,856 - PP_0256 0.78 +0.9 311,856 - PP_0256 0.78 +1.3 311,889 - PP_0256 0.79 -0.9 311,889 - PP_0256 0.79 +1.6 312,023 + PP_0256 0.85 +0.3 312,105 + PP_0256 0.88 +0.9 312,106 - PP_0256 0.88 +0.9 312,250 - -1.6 312,250 - +0.2 312,279 + +0.4 312,280 - +0.4 312,314 + -0.7 312,314 + +0.5 312,323 + -0.7 312,324 - +0.1 312,382 + +0.1 312,383 - +0.7 312,404 - -0.4 312,404 - +0.4 312,437 + +2.3 312,925 + PP_0257 0.65 -2.1 312,926 - PP_0257 0.66 -0.5 312,926 - PP_0257 0.66 -1.4 312,926 - PP_0257 0.66 -0.4 313,069 + PP_0257 0.83 -1.2 313,069 + PP_0257 0.83 -0.4 313,069 + PP_0257 0.83 +0.3 313,069 + PP_0257 0.83 -2.3 313,070 - PP_0257 0.83 -0.1 313,070 - PP_0257 0.83 -3.0 313,139 - -0.3 313,144 + +0.6 313,144 + +0.2 313,145 - -2.1 313,145 - -0.5 313,241 + -0.2 313,289 + -0.3 313,290 - +0.4 313,299 + +0.8 313,300 - +0.9 313,300 - -0.8 313,336 - +1.8 313,472 + PP_0258 0.19 -0.1 313,472 + PP_0258 0.19 -0.6 313,473 - -1.1 313,527 - PP_0258 0.32 +0.1 313,723 + PP_0258 0.76 -0.3 313,724 - PP_0258 0.76 -0.1 313,741 + PP_0258 0.80 -0.1 313,742 - PP_0258 0.80 +1.1 313,841 + -0.0 313,841 + -0.1 313,879 + +0.7 313,880 - +0.6 313,887 + -0.6 313,893 + +0.3 314,110 + PP_0259 0.35 -0.8 314,110 + PP_0259 0.35 -0.3 314,111 - PP_0259 0.35 +0.0 314,140 + PP_0259 0.40 +0.4 314,140 + PP_0259 0.40 +0.2 314,140 + PP_0259 0.40 +1.0 314,140 + PP_0259 0.40 +1.1 314,141 - PP_0259 0.40 -2.5 314,141 - PP_0259 0.40 -0.1 314,141 - PP_0259 0.40 -0.4
Or see this region's nucleotide sequence