Strain Fitness in Pseudomonas putida KT2440 around PP_0234

Experiment: Vanillin (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0233 and PP_0234 are separated by 474 nucleotidesPP_0234 and PP_0235 are separated by 165 nucleotides PP_0233: PP_0233 - taurine ABC transporter periplasmic binding subunit, at 287,136 to 288,107 _0233 PP_0234: PP_0234 - outer-membrane porin E, at 288,582 to 289,916 _0234 PP_0235: PP_0235 - Peroxidase, at 290,082 to 290,720 _0235 Position (kb) 288 289 290Strain fitness (log2 ratio) -2 -1 0 1 2at 287.667 kb on - strand, within PP_0233at 287.698 kb on + strand, within PP_0233at 287.698 kb on + strand, within PP_0233at 287.698 kb on + strand, within PP_0233at 287.698 kb on + strand, within PP_0233at 287.699 kb on - strand, within PP_0233at 287.699 kb on - strand, within PP_0233at 287.969 kb on - strand, within PP_0233at 288.171 kb on + strandat 288.216 kb on - strandat 288.278 kb on - strandat 288.357 kb on - strandat 288.359 kb on + strandat 288.359 kb on + strandat 288.359 kb on + strandat 288.360 kb on - strandat 288.360 kb on - strandat 288.362 kb on - strandat 288.362 kb on - strandat 288.409 kb on + strandat 288.421 kb on + strandat 288.446 kb on - strandat 288.446 kb on - strandat 288.446 kb on - strandat 288.467 kb on + strandat 288.482 kb on + strandat 288.482 kb on + strandat 288.483 kb on - strandat 288.502 kb on + strandat 288.550 kb on + strandat 288.550 kb on + strandat 288.550 kb on + strandat 288.562 kb on - strandat 288.568 kb on + strandat 288.569 kb on - strandat 288.569 kb on - strandat 288.586 kb on - strandat 288.586 kb on - strandat 288.586 kb on - strandat 288.586 kb on - strandat 288.693 kb on + strandat 288.693 kb on + strandat 288.694 kb on - strandat 288.694 kb on - strandat 288.694 kb on - strandat 288.694 kb on - strandat 288.763 kb on - strand, within PP_0234at 288.791 kb on - strand, within PP_0234at 288.791 kb on - strand, within PP_0234at 288.929 kb on + strand, within PP_0234at 288.967 kb on - strand, within PP_0234at 288.967 kb on - strand, within PP_0234at 288.987 kb on - strand, within PP_0234at 288.987 kb on - strand, within PP_0234at 288.987 kb on - strand, within PP_0234at 289.194 kb on + strand, within PP_0234at 289.194 kb on + strand, within PP_0234at 289.194 kb on + strand, within PP_0234at 289.194 kb on + strand, within PP_0234at 289.194 kb on + strand, within PP_0234at 289.195 kb on - strand, within PP_0234at 289.195 kb on - strand, within PP_0234at 289.195 kb on - strand, within PP_0234at 289.195 kb on - strand, within PP_0234at 289.224 kb on + strand, within PP_0234at 289.224 kb on + strand, within PP_0234at 289.224 kb on + strand, within PP_0234at 289.225 kb on - strand, within PP_0234at 289.225 kb on - strand, within PP_0234at 289.225 kb on - strand, within PP_0234at 289.225 kb on - strand, within PP_0234at 289.227 kb on + strand, within PP_0234at 289.227 kb on + strand, within PP_0234at 289.227 kb on + strand, within PP_0234at 289.228 kb on - strand, within PP_0234at 289.228 kb on - strand, within PP_0234at 289.228 kb on - strand, within PP_0234at 289.230 kb on + strand, within PP_0234at 289.231 kb on - strand, within PP_0234at 289.231 kb on - strand, within PP_0234at 289.231 kb on - strand, within PP_0234at 289.231 kb on - strand, within PP_0234at 289.251 kb on + strand, within PP_0234at 289.251 kb on + strand, within PP_0234at 289.252 kb on - strand, within PP_0234at 289.252 kb on - strand, within PP_0234at 289.282 kb on + strand, within PP_0234at 289.283 kb on - strand, within PP_0234at 289.283 kb on - strand, within PP_0234at 289.283 kb on - strand, within PP_0234at 289.327 kb on - strand, within PP_0234at 289.369 kb on - strand, within PP_0234at 289.446 kb on + strand, within PP_0234at 289.447 kb on - strand, within PP_0234at 289.447 kb on - strand, within PP_0234at 289.526 kb on + strand, within PP_0234at 289.526 kb on + strand, within PP_0234at 289.526 kb on + strand, within PP_0234at 289.527 kb on - strand, within PP_0234at 289.527 kb on - strand, within PP_0234at 289.585 kb on - strand, within PP_0234at 289.598 kb on + strand, within PP_0234at 289.599 kb on - strand, within PP_0234at 289.635 kb on - strand, within PP_0234at 289.635 kb on - strand, within PP_0234at 289.635 kb on - strand, within PP_0234at 289.635 kb on - strand, within PP_0234at 289.656 kb on + strand, within PP_0234at 289.657 kb on - strand, within PP_0234at 289.657 kb on - strand, within PP_0234at 289.705 kb on - strand, within PP_0234at 289.705 kb on - strand, within PP_0234at 289.896 kb on + strandat 289.896 kb on + strandat 289.896 kb on + strandat 289.896 kb on + strandat 289.897 kb on - strandat 289.897 kb on - strandat 289.897 kb on - strandat 289.902 kb on + strandat 289.902 kb on + strandat 289.902 kb on + strandat 289.902 kb on + strandat 289.903 kb on - strandat 289.903 kb on - strandat 289.921 kb on + strandat 289.921 kb on + strandat 289.974 kb on - strandat 290.048 kb on + strandat 290.048 kb on + strandat 290.049 kb on - strandat 290.049 kb on - strandat 290.348 kb on + strand, within PP_0235at 290.349 kb on - strand, within PP_0235at 290.404 kb on - strand, within PP_0235at 290.404 kb on - strand, within PP_0235at 290.471 kb on + strand, within PP_0235at 290.472 kb on - strand, within PP_0235at 290.493 kb on - strand, within PP_0235at 290.493 kb on - strand, within PP_0235at 290.688 kb on + strandat 290.689 kb on - strandat 290.745 kb on - strandat 290.903 kb on + strandat 290.904 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin (C)
remove
287,667 - PP_0233 0.55 -0.7
287,698 + PP_0233 0.58 -0.7
287,698 + PP_0233 0.58 -0.1
287,698 + PP_0233 0.58 -0.6
287,698 + PP_0233 0.58 -0.5
287,699 - PP_0233 0.58 +1.0
287,699 - PP_0233 0.58 -1.1
287,969 - PP_0233 0.86 +0.1
288,171 + +0.3
288,216 - +0.3
288,278 - -0.3
288,357 - +0.2
288,359 + +0.0
288,359 + -0.6
288,359 + -0.2
288,360 - +0.2
288,360 - +0.2
288,362 - +0.5
288,362 - +0.6
288,409 + -0.7
288,421 + +0.1
288,446 - +0.7
288,446 - +0.9
288,446 - -0.4
288,467 + -0.0
288,482 + +0.2
288,482 + -0.3
288,483 - -0.3
288,502 + -0.3
288,550 + +0.2
288,550 + -0.9
288,550 + -0.4
288,562 - -1.1
288,568 + +1.5
288,569 - -0.3
288,569 - +0.7
288,586 - +0.8
288,586 - +1.0
288,586 - -0.5
288,586 - +0.4
288,693 + +0.4
288,693 + -0.3
288,694 - +0.6
288,694 - +0.8
288,694 - -0.6
288,694 - +0.4
288,763 - PP_0234 0.14 +1.1
288,791 - PP_0234 0.16 -0.2
288,791 - PP_0234 0.16 -0.1
288,929 + PP_0234 0.26 -1.6
288,967 - PP_0234 0.29 +0.3
288,967 - PP_0234 0.29 -0.4
288,987 - PP_0234 0.30 -0.8
288,987 - PP_0234 0.30 -0.1
288,987 - PP_0234 0.30 -0.2
289,194 + PP_0234 0.46 -1.5
289,194 + PP_0234 0.46 -0.2
289,194 + PP_0234 0.46 +0.6
289,194 + PP_0234 0.46 -0.1
289,194 + PP_0234 0.46 -0.2
289,195 - PP_0234 0.46 -1.3
289,195 - PP_0234 0.46 +0.3
289,195 - PP_0234 0.46 +0.3
289,195 - PP_0234 0.46 -0.0
289,224 + PP_0234 0.48 -0.1
289,224 + PP_0234 0.48 -0.5
289,224 + PP_0234 0.48 +0.8
289,225 - PP_0234 0.48 -1.2
289,225 - PP_0234 0.48 -0.5
289,225 - PP_0234 0.48 -2.1
289,225 - PP_0234 0.48 -2.1
289,227 + PP_0234 0.48 +0.7
289,227 + PP_0234 0.48 -0.7
289,227 + PP_0234 0.48 -0.3
289,228 - PP_0234 0.48 +0.2
289,228 - PP_0234 0.48 +0.5
289,228 - PP_0234 0.48 +0.4
289,230 + PP_0234 0.49 +0.5
289,231 - PP_0234 0.49 -0.2
289,231 - PP_0234 0.49 -0.0
289,231 - PP_0234 0.49 -0.2
289,231 - PP_0234 0.49 -0.4
289,251 + PP_0234 0.50 +0.1
289,251 + PP_0234 0.50 +0.2
289,252 - PP_0234 0.50 -0.7
289,252 - PP_0234 0.50 -0.8
289,282 + PP_0234 0.52 -0.7
289,283 - PP_0234 0.53 -0.7
289,283 - PP_0234 0.53 +2.3
289,283 - PP_0234 0.53 -1.9
289,327 - PP_0234 0.56 -0.3
289,369 - PP_0234 0.59 -0.3
289,446 + PP_0234 0.65 +0.7
289,447 - PP_0234 0.65 +0.5
289,447 - PP_0234 0.65 +0.0
289,526 + PP_0234 0.71 -0.0
289,526 + PP_0234 0.71 -0.6
289,526 + PP_0234 0.71 -1.6
289,527 - PP_0234 0.71 +0.5
289,527 - PP_0234 0.71 +0.2
289,585 - PP_0234 0.75 -0.0
289,598 + PP_0234 0.76 -0.5
289,599 - PP_0234 0.76 +0.3
289,635 - PP_0234 0.79 -0.6
289,635 - PP_0234 0.79 -0.4
289,635 - PP_0234 0.79 -1.3
289,635 - PP_0234 0.79 -1.1
289,656 + PP_0234 0.80 +0.3
289,657 - PP_0234 0.81 +0.0
289,657 - PP_0234 0.81 -2.2
289,705 - PP_0234 0.84 -0.3
289,705 - PP_0234 0.84 -0.1
289,896 + +0.2
289,896 + -0.3
289,896 + -0.0
289,896 + -0.6
289,897 - -0.9
289,897 - +0.2
289,897 - +1.1
289,902 + -0.6
289,902 + +0.5
289,902 + +0.9
289,902 + +0.4
289,903 - +0.4
289,903 - -0.9
289,921 + +0.0
289,921 + -0.3
289,974 - -1.4
290,048 + +0.4
290,048 + +1.0
290,049 - +0.4
290,049 - +0.4
290,348 + PP_0235 0.42 -0.3
290,349 - PP_0235 0.42 -0.1
290,404 - PP_0235 0.50 -0.8
290,404 - PP_0235 0.50 -0.2
290,471 + PP_0235 0.61 +0.3
290,472 - PP_0235 0.61 +0.2
290,493 - PP_0235 0.64 -0.3
290,493 - PP_0235 0.64 -0.2
290,688 + -0.4
290,689 - +0.4
290,745 - +0.4
290,903 + +0.4
290,904 - +0.2

Or see this region's nucleotide sequence