Strain Fitness in Pseudomonas simiae WCS417 around PS417_00295

Experiment: Adenine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_00290 and PS417_00295 are separated by 131 nucleotidesPS417_00295 and PS417_00300 are separated by 367 nucleotides PS417_00290: PS417_00290 - SulP family inorganic anion transporter, at 56,412 to 57,959 _00290 PS417_00295: PS417_00295 - hypothetical protein, at 58,091 to 58,738 _00295 PS417_00300: PS417_00300 - cytochrome B559 subunit alpha, at 59,106 to 60,233 _00300 Position (kb) 58 59Strain fitness (log2 ratio) -3 -2 -1 0 1at 57.333 kb on - strand, within PS417_00290at 57.471 kb on + strand, within PS417_00290at 57.542 kb on + strand, within PS417_00290at 57.543 kb on - strand, within PS417_00290at 57.543 kb on - strand, within PS417_00290at 57.543 kb on - strand, within PS417_00290at 57.547 kb on - strand, within PS417_00290at 57.595 kb on + strand, within PS417_00290at 57.595 kb on + strand, within PS417_00290at 57.802 kb on - strand, within PS417_00290at 57.802 kb on - strand, within PS417_00290at 57.934 kb on + strandat 57.934 kb on + strandat 57.935 kb on - strandat 58.077 kb on - strandat 58.080 kb on - strandat 58.080 kb on - strandat 58.256 kb on + strand, within PS417_00295at 58.364 kb on - strand, within PS417_00295at 58.365 kb on + strand, within PS417_00295at 58.365 kb on + strand, within PS417_00295at 58.366 kb on - strand, within PS417_00295at 58.366 kb on - strand, within PS417_00295at 58.404 kb on + strand, within PS417_00295at 58.405 kb on - strand, within PS417_00295at 58.405 kb on - strand, within PS417_00295at 58.573 kb on - strand, within PS417_00295at 58.761 kb on + strandat 58.762 kb on - strandat 58.783 kb on + strandat 58.784 kb on - strandat 58.784 kb on - strandat 58.792 kb on + strandat 58.794 kb on + strandat 58.794 kb on + strandat 58.794 kb on + strandat 58.794 kb on + strandat 58.875 kb on + strandat 58.962 kb on + strandat 58.985 kb on - strandat 59.030 kb on + strandat 59.031 kb on - strandat 59.038 kb on - strandat 59.187 kb on - strandat 59.439 kb on + strand, within PS417_00300at 59.439 kb on + strand, within PS417_00300at 59.440 kb on - strand, within PS417_00300at 59.499 kb on + strand, within PS417_00300at 59.505 kb on + strand, within PS417_00300at 59.505 kb on + strand, within PS417_00300at 59.505 kb on + strand, within PS417_00300at 59.589 kb on + strand, within PS417_00300at 59.589 kb on + strand, within PS417_00300at 59.590 kb on - strand, within PS417_00300at 59.590 kb on - strand, within PS417_00300

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
remove
57,333 - PS417_00290 0.59 -0.2
57,471 + PS417_00290 0.68 -0.6
57,542 + PS417_00290 0.73 +0.0
57,543 - PS417_00290 0.73 -0.4
57,543 - PS417_00290 0.73 +0.8
57,543 - PS417_00290 0.73 +0.6
57,547 - PS417_00290 0.73 +0.7
57,595 + PS417_00290 0.76 -0.5
57,595 + PS417_00290 0.76 +0.0
57,802 - PS417_00290 0.90 +0.3
57,802 - PS417_00290 0.90 -3.0
57,934 + -0.3
57,934 + -0.0
57,935 - -0.5
58,077 - -1.0
58,080 - +0.3
58,080 - +0.0
58,256 + PS417_00295 0.25 -0.1
58,364 - PS417_00295 0.42 -1.6
58,365 + PS417_00295 0.42 -0.1
58,365 + PS417_00295 0.42 -1.4
58,366 - PS417_00295 0.42 +0.5
58,366 - PS417_00295 0.42 -1.1
58,404 + PS417_00295 0.48 +0.2
58,405 - PS417_00295 0.48 -1.1
58,405 - PS417_00295 0.48 -1.0
58,573 - PS417_00295 0.74 -0.6
58,761 + +0.1
58,762 - -0.3
58,783 + -0.5
58,784 - +0.0
58,784 - +0.8
58,792 + -1.1
58,794 + +1.0
58,794 + -0.2
58,794 + -1.4
58,794 + -2.8
58,875 + -0.6
58,962 + -0.4
58,985 - +0.3
59,030 + -0.8
59,031 - +0.2
59,038 - +1.2
59,187 - +0.2
59,439 + PS417_00300 0.30 -0.1
59,439 + PS417_00300 0.30 +0.6
59,440 - PS417_00300 0.30 +0.3
59,499 + PS417_00300 0.35 +1.1
59,505 + PS417_00300 0.35 +0.2
59,505 + PS417_00300 0.35 +0.3
59,505 + PS417_00300 0.35 +0.6
59,589 + PS417_00300 0.43 +0.3
59,589 + PS417_00300 0.43 -1.0
59,590 - PS417_00300 0.43 -0.0
59,590 - PS417_00300 0.43 -0.5

Or see this region's nucleotide sequence