Strain Fitness in Pseudomonas simiae WCS417 around PS417_21930

Experiment: Adenine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_21920 and PS417_21925 are separated by 106 nucleotidesPS417_21925 and PS417_21930 are separated by 81 nucleotidesPS417_21930 and PS417_21935 are separated by 88 nucleotidesPS417_21935 and PS417_21940 are separated by 11 nucleotides PS417_21920: PS417_21920 - transcriptional regulator, at 4,757,021 to 4,757,917 _21920 PS417_21925: PS417_21925 - short-chain dehydrogenase, at 4,758,024 to 4,758,782 _21925 PS417_21930: PS417_21930 - membrane protein, at 4,758,864 to 4,759,328 _21930 PS417_21935: PS417_21935 - transcriptional regulator, at 4,759,417 to 4,760,271 _21935 PS417_21940: PS417_21940 - hypothetical protein, at 4,760,283 to 4,760,528 _21940 Position (kb) 4758 4759 4760Strain fitness (log2 ratio) -2 -1 0 1at 4757.982 kb on + strandat 4758.044 kb on + strandat 4758.044 kb on + strandat 4758.045 kb on - strandat 4758.124 kb on - strand, within PS417_21925at 4758.268 kb on + strand, within PS417_21925at 4758.268 kb on + strand, within PS417_21925at 4758.269 kb on - strand, within PS417_21925at 4758.446 kb on + strand, within PS417_21925at 4758.447 kb on - strand, within PS417_21925at 4758.447 kb on - strand, within PS417_21925at 4758.493 kb on - strand, within PS417_21925at 4758.894 kb on - strandat 4758.940 kb on + strand, within PS417_21930at 4758.952 kb on + strand, within PS417_21930at 4758.953 kb on - strand, within PS417_21930at 4758.953 kb on - strand, within PS417_21930at 4758.953 kb on - strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.959 kb on - strand, within PS417_21930at 4758.959 kb on - strand, within PS417_21930at 4758.959 kb on - strand, within PS417_21930at 4758.959 kb on - strand, within PS417_21930at 4758.959 kb on - strand, within PS417_21930at 4758.959 kb on - strand, within PS417_21930at 4758.964 kb on + strand, within PS417_21930at 4759.001 kb on + strand, within PS417_21930at 4759.391 kb on - strandat 4759.554 kb on - strand, within PS417_21935at 4759.721 kb on - strand, within PS417_21935at 4759.721 kb on - strand, within PS417_21935at 4759.959 kb on - strand, within PS417_21935at 4760.117 kb on + strand, within PS417_21935at 4760.323 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
remove
4,757,982 + -0.3
4,758,044 + -0.2
4,758,044 + +0.3
4,758,045 - -1.0
4,758,124 - PS417_21925 0.13 -1.5
4,758,268 + PS417_21925 0.32 -0.4
4,758,268 + PS417_21925 0.32 -0.1
4,758,269 - PS417_21925 0.32 -0.5
4,758,446 + PS417_21925 0.56 -0.4
4,758,447 - PS417_21925 0.56 -1.0
4,758,447 - PS417_21925 0.56 -0.1
4,758,493 - PS417_21925 0.62 -0.3
4,758,894 - -0.3
4,758,940 + PS417_21930 0.16 -0.1
4,758,952 + PS417_21930 0.19 +0.8
4,758,953 - PS417_21930 0.19 -1.3
4,758,953 - PS417_21930 0.19 -1.9
4,758,953 - PS417_21930 0.19 -1.0
4,758,958 + PS417_21930 0.20 -0.8
4,758,958 + PS417_21930 0.20 +0.2
4,758,958 + PS417_21930 0.20 +0.4
4,758,958 + PS417_21930 0.20 -2.2
4,758,958 + PS417_21930 0.20 -1.2
4,758,958 + PS417_21930 0.20 -0.1
4,758,958 + PS417_21930 0.20 -2.0
4,758,958 + PS417_21930 0.20 -0.9
4,758,958 + PS417_21930 0.20 +0.9
4,758,958 + PS417_21930 0.20 -0.8
4,758,959 - PS417_21930 0.20 -0.5
4,758,959 - PS417_21930 0.20 -2.5
4,758,959 - PS417_21930 0.20 +1.6
4,758,959 - PS417_21930 0.20 +0.2
4,758,959 - PS417_21930 0.20 -0.9
4,758,959 - PS417_21930 0.20 -0.5
4,758,964 + PS417_21930 0.22 -0.7
4,759,001 + PS417_21930 0.29 -1.4
4,759,391 - -1.1
4,759,554 - PS417_21935 0.16 +0.8
4,759,721 - PS417_21935 0.36 -1.3
4,759,721 - PS417_21935 0.36 -0.2
4,759,959 - PS417_21935 0.63 -0.1
4,760,117 + PS417_21935 0.82 -0.3
4,760,323 + -0.1

Or see this region's nucleotide sequence