Strain Fitness in Pseudomonas simiae WCS417 around PS417_17840

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17830 and PS417_17835 overlap by 4 nucleotidesPS417_17835 and PS417_17840 are separated by 5 nucleotidesPS417_17840 and PS417_17845 are separated by 49 nucleotidesPS417_17845 and PS417_17850 are separated by 15 nucleotides PS417_17830: PS417_17830 - 4-hydroxyphenylacetate isomerase, at 3,893,873 to 3,894,538 _17830 PS417_17835: PS417_17835 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 3,894,535 to 3,895,305 _17835 PS417_17840: PS417_17840 - betaine-aldehyde dehydrogenase, at 3,895,311 to 3,896,771 _17840 PS417_17845: PS417_17845 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 3,896,821 to 3,897,678 _17845 PS417_17850: PS417_17850 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 3,897,694 to 3,898,107 _17850 Position (kb) 3895 3896 3897Strain fitness (log2 ratio) -2 -1 0 1at 3894.515 kb on - strandat 3894.766 kb on + strand, within PS417_17835at 3894.766 kb on + strand, within PS417_17835at 3894.767 kb on - strand, within PS417_17835at 3894.821 kb on - strand, within PS417_17835at 3894.821 kb on - strand, within PS417_17835at 3894.837 kb on - strand, within PS417_17835at 3895.130 kb on - strandat 3895.368 kb on + strandat 3895.369 kb on - strandat 3895.369 kb on - strandat 3895.369 kb on - strandat 3895.369 kb on - strandat 3895.698 kb on + strand, within PS417_17840at 3895.699 kb on - strand, within PS417_17840at 3896.542 kb on - strand, within PS417_17840at 3896.792 kb on - strandat 3896.805 kb on - strandat 3896.858 kb on + strandat 3896.870 kb on - strandat 3897.046 kb on + strand, within PS417_17845at 3897.088 kb on + strand, within PS417_17845at 3897.217 kb on + strand, within PS417_17845at 3897.217 kb on + strand, within PS417_17845at 3897.218 kb on - strand, within PS417_17845

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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3,894,515 - -0.6
3,894,766 + PS417_17835 0.30 +1.0
3,894,766 + PS417_17835 0.30 +0.7
3,894,767 - PS417_17835 0.30 +0.7
3,894,821 - PS417_17835 0.37 -0.4
3,894,821 - PS417_17835 0.37 -2.1
3,894,837 - PS417_17835 0.39 -1.1
3,895,130 - +0.3
3,895,368 + -0.1
3,895,369 - +0.1
3,895,369 - -0.6
3,895,369 - +0.5
3,895,369 - +1.0
3,895,698 + PS417_17840 0.26 -1.5
3,895,699 - PS417_17840 0.27 -0.5
3,896,542 - PS417_17840 0.84 -0.7
3,896,792 - +0.1
3,896,805 - +0.3
3,896,858 + +0.1
3,896,870 - -0.2
3,897,046 + PS417_17845 0.26 +0.9
3,897,088 + PS417_17845 0.31 -0.2
3,897,217 + PS417_17845 0.46 +0.0
3,897,217 + PS417_17845 0.46 -0.7
3,897,218 - PS417_17845 0.46 +0.0

Or see this region's nucleotide sequence