Strain Fitness in Pseudomonas simiae WCS417 around PS417_08840

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08830 and PS417_08835 are separated by 50 nucleotidesPS417_08835 and PS417_08840 overlap by 8 nucleotidesPS417_08840 and PS417_08845 are separated by 235 nucleotidesPS417_08845 and PS417_08850 are separated by 65 nucleotides PS417_08830: PS417_08830 - membrane protein, at 1,920,585 to 1,921,499 _08830 PS417_08835: PS417_08835 - ABC transporter, at 1,921,550 to 1,922,338 _08835 PS417_08840: PS417_08840 - serine/threonine protein kinase, at 1,922,331 to 1,923,629 _08840 PS417_08845: PS417_08845 - hypothetical protein, at 1,923,865 to 1,924,233 _08845 PS417_08850: PS417_08850 - beta (1-6) glucans synthase, at 1,924,299 to 1,925,852 _08850 Position (kb) 1922 1923 1924Strain fitness (log2 ratio) -2 -1 0 1 2at 1921.508 kb on + strandat 1921.584 kb on + strandat 1921.584 kb on + strandat 1921.584 kb on + strandat 1921.584 kb on + strandat 1921.585 kb on - strandat 1921.590 kb on + strandat 1921.964 kb on - strand, within PS417_08835at 1922.055 kb on + strand, within PS417_08835at 1922.055 kb on + strand, within PS417_08835at 1922.056 kb on - strand, within PS417_08835at 1922.056 kb on - strand, within PS417_08835at 1922.103 kb on + strand, within PS417_08835at 1922.103 kb on + strand, within PS417_08835at 1922.116 kb on - strand, within PS417_08835at 1922.149 kb on - strand, within PS417_08835at 1922.149 kb on - strand, within PS417_08835at 1922.149 kb on - strand, within PS417_08835at 1922.149 kb on - strand, within PS417_08835at 1922.332 kb on + strandat 1922.617 kb on + strand, within PS417_08840at 1922.618 kb on - strand, within PS417_08840at 1922.618 kb on - strand, within PS417_08840at 1922.827 kb on + strand, within PS417_08840at 1922.854 kb on + strand, within PS417_08840at 1922.902 kb on + strand, within PS417_08840at 1922.975 kb on - strand, within PS417_08840at 1923.091 kb on + strand, within PS417_08840at 1923.092 kb on - strand, within PS417_08840at 1923.148 kb on + strand, within PS417_08840at 1923.149 kb on - strand, within PS417_08840at 1923.263 kb on - strand, within PS417_08840at 1923.266 kb on - strand, within PS417_08840at 1923.280 kb on + strand, within PS417_08840at 1923.281 kb on - strand, within PS417_08840at 1923.281 kb on - strand, within PS417_08840at 1923.440 kb on - strand, within PS417_08840at 1923.541 kb on + strandat 1923.541 kb on + strandat 1923.541 kb on + strandat 1923.634 kb on + strandat 1923.635 kb on - strandat 1923.653 kb on + strandat 1923.653 kb on + strandat 1923.654 kb on - strandat 1923.657 kb on + strandat 1923.658 kb on - strandat 1923.658 kb on - strandat 1923.658 kb on - strandat 1923.674 kb on + strandat 1923.674 kb on + strandat 1923.674 kb on + strandat 1923.747 kb on + strandat 1923.747 kb on + strandat 1923.747 kb on + strandat 1923.748 kb on - strandat 1923.748 kb on - strandat 1923.748 kb on - strandat 1923.748 kb on - strandat 1923.775 kb on + strandat 1923.776 kb on - strandat 1923.776 kb on - strandat 1923.776 kb on - strandat 1923.776 kb on - strandat 1923.777 kb on + strandat 1923.777 kb on + strandat 1923.777 kb on + strandat 1923.778 kb on - strandat 1923.781 kb on + strandat 1923.798 kb on + strandat 1923.798 kb on + strandat 1923.799 kb on - strandat 1923.888 kb on - strandat 1923.897 kb on + strandat 1923.898 kb on - strandat 1923.898 kb on - strandat 1923.928 kb on + strand, within PS417_08845at 1924.159 kb on + strand, within PS417_08845at 1924.159 kb on + strand, within PS417_08845at 1924.159 kb on + strand, within PS417_08845at 1924.160 kb on - strand, within PS417_08845at 1924.234 kb on + strandat 1924.300 kb on + strandat 1924.300 kb on + strandat 1924.400 kb on - strandat 1924.431 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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1,921,508 + -0.1
1,921,584 + -0.7
1,921,584 + -0.2
1,921,584 + +0.0
1,921,584 + +0.6
1,921,585 - -0.4
1,921,590 + +0.3
1,921,964 - PS417_08835 0.52 -0.1
1,922,055 + PS417_08835 0.64 -1.4
1,922,055 + PS417_08835 0.64 -0.2
1,922,056 - PS417_08835 0.64 -0.1
1,922,056 - PS417_08835 0.64 +0.5
1,922,103 + PS417_08835 0.70 -0.3
1,922,103 + PS417_08835 0.70 -0.4
1,922,116 - PS417_08835 0.72 -0.1
1,922,149 - PS417_08835 0.76 -0.0
1,922,149 - PS417_08835 0.76 -0.3
1,922,149 - PS417_08835 0.76 +0.6
1,922,149 - PS417_08835 0.76 -0.6
1,922,332 + -1.8
1,922,617 + PS417_08840 0.22 -0.2
1,922,618 - PS417_08840 0.22 +0.3
1,922,618 - PS417_08840 0.22 -0.6
1,922,827 + PS417_08840 0.38 +0.2
1,922,854 + PS417_08840 0.40 +0.5
1,922,902 + PS417_08840 0.44 -0.1
1,922,975 - PS417_08840 0.50 +0.5
1,923,091 + PS417_08840 0.59 +1.3
1,923,092 - PS417_08840 0.59 -1.3
1,923,148 + PS417_08840 0.63 -1.5
1,923,149 - PS417_08840 0.63 -1.3
1,923,263 - PS417_08840 0.72 +0.1
1,923,266 - PS417_08840 0.72 -2.0
1,923,280 + PS417_08840 0.73 +0.5
1,923,281 - PS417_08840 0.73 +0.7
1,923,281 - PS417_08840 0.73 +0.0
1,923,440 - PS417_08840 0.85 +0.7
1,923,541 + +2.5
1,923,541 + +0.8
1,923,541 + +0.6
1,923,634 + -0.6
1,923,635 - -0.5
1,923,653 + -1.0
1,923,653 + -0.8
1,923,654 - -0.5
1,923,657 + +0.2
1,923,658 - +0.2
1,923,658 - +0.3
1,923,658 - +0.3
1,923,674 + +0.3
1,923,674 + +0.5
1,923,674 + -0.7
1,923,747 + -0.2
1,923,747 + -0.6
1,923,747 + +0.3
1,923,748 - +0.3
1,923,748 - +0.2
1,923,748 - -0.8
1,923,748 - -0.3
1,923,775 + -0.6
1,923,776 - +0.6
1,923,776 - -0.8
1,923,776 - +0.2
1,923,776 - -0.2
1,923,777 + +0.5
1,923,777 + -1.5
1,923,777 + -0.9
1,923,778 - +0.2
1,923,781 + +0.8
1,923,798 + +0.4
1,923,798 + -0.1
1,923,799 - +0.1
1,923,888 - -0.3
1,923,897 + +0.7
1,923,898 - +1.2
1,923,898 - +0.9
1,923,928 + PS417_08845 0.17 +0.1
1,924,159 + PS417_08845 0.80 -0.4
1,924,159 + PS417_08845 0.80 +0.0
1,924,159 + PS417_08845 0.80 -0.3
1,924,160 - PS417_08845 0.80 -0.1
1,924,234 + -0.9
1,924,300 + -0.1
1,924,300 + +0.2
1,924,400 - +0.6
1,924,431 - -0.3

Or see this region's nucleotide sequence