Strain Fitness in Pseudomonas simiae WCS417 around PS417_08030

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08025 and PS417_08030 overlap by 20 nucleotidesPS417_08030 and PS417_08035 are separated by 122 nucleotides PS417_08025: PS417_08025 - acetylornithine aminotransferase, at 1,755,411 to 1,756,580 _08025 PS417_08030: PS417_08030 - transcriptional regulator, at 1,756,561 to 1,757,484 _08030 PS417_08035: PS417_08035 - adenine transporter (MFS superfamily) (from data), at 1,757,607 to 1,758,797 _08035 Position (kb) 1756 1757 1758Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1755.725 kb on + strand, within PS417_08025at 1755.887 kb on - strand, within PS417_08025at 1756.211 kb on + strand, within PS417_08025at 1756.775 kb on - strand, within PS417_08030at 1756.870 kb on + strand, within PS417_08030at 1757.096 kb on + strand, within PS417_08030at 1757.096 kb on + strand, within PS417_08030at 1757.097 kb on - strand, within PS417_08030at 1757.380 kb on - strand, within PS417_08030at 1757.382 kb on - strand, within PS417_08030at 1757.382 kb on - strand, within PS417_08030at 1757.382 kb on - strand, within PS417_08030at 1757.679 kb on + strandat 1757.679 kb on + strandat 1757.679 kb on + strandat 1757.679 kb on + strandat 1757.679 kb on + strandat 1757.679 kb on + strandat 1757.679 kb on + strandat 1757.680 kb on - strandat 1757.680 kb on - strandat 1757.680 kb on - strandat 1757.680 kb on - strandat 1757.680 kb on - strandat 1757.680 kb on - strandat 1757.680 kb on - strandat 1757.750 kb on + strand, within PS417_08035at 1758.140 kb on - strand, within PS417_08035at 1758.223 kb on + strand, within PS417_08035at 1758.223 kb on + strand, within PS417_08035at 1758.224 kb on - strand, within PS417_08035at 1758.224 kb on - strand, within PS417_08035at 1758.224 kb on - strand, within PS417_08035at 1758.342 kb on + strand, within PS417_08035at 1758.343 kb on - strand, within PS417_08035at 1758.343 kb on - strand, within PS417_08035at 1758.346 kb on + strand, within PS417_08035at 1758.346 kb on + strand, within PS417_08035at 1758.347 kb on - strand, within PS417_08035at 1758.347 kb on - strand, within PS417_08035at 1758.347 kb on - strand, within PS417_08035at 1758.378 kb on + strand, within PS417_08035at 1758.379 kb on - strand, within PS417_08035at 1758.379 kb on - strand, within PS417_08035at 1758.444 kb on + strand, within PS417_08035

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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1,755,725 + PS417_08025 0.27 +0.7
1,755,887 - PS417_08025 0.41 -0.7
1,756,211 + PS417_08025 0.68 -0.5
1,756,775 - PS417_08030 0.23 -3.2
1,756,870 + PS417_08030 0.33 -3.5
1,757,096 + PS417_08030 0.58 -1.3
1,757,096 + PS417_08030 0.58 -3.6
1,757,097 - PS417_08030 0.58 -1.4
1,757,380 - PS417_08030 0.89 -3.1
1,757,382 - PS417_08030 0.89 -3.9
1,757,382 - PS417_08030 0.89 -3.3
1,757,382 - PS417_08030 0.89 -3.5
1,757,679 + +1.0
1,757,679 + -0.5
1,757,679 + -4.1
1,757,679 + -2.7
1,757,679 + -2.5
1,757,679 + -1.5
1,757,679 + -4.2
1,757,680 - -3.1
1,757,680 - -2.1
1,757,680 - -5.8
1,757,680 - -2.7
1,757,680 - -1.5
1,757,680 - -3.3
1,757,680 - -1.0
1,757,750 + PS417_08035 0.12 -2.3
1,758,140 - PS417_08035 0.45 -5.3
1,758,223 + PS417_08035 0.52 -2.4
1,758,223 + PS417_08035 0.52 -3.7
1,758,224 - PS417_08035 0.52 -5.4
1,758,224 - PS417_08035 0.52 -3.9
1,758,224 - PS417_08035 0.52 -1.5
1,758,342 + PS417_08035 0.62 -2.1
1,758,343 - PS417_08035 0.62 -3.9
1,758,343 - PS417_08035 0.62 -1.5
1,758,346 + PS417_08035 0.62 -3.3
1,758,346 + PS417_08035 0.62 -4.4
1,758,347 - PS417_08035 0.62 -3.0
1,758,347 - PS417_08035 0.62 -2.9
1,758,347 - PS417_08035 0.62 -4.5
1,758,378 + PS417_08035 0.65 +0.3
1,758,379 - PS417_08035 0.65 -4.1
1,758,379 - PS417_08035 0.65 -2.8
1,758,444 + PS417_08035 0.70 -4.8

Or see this region's nucleotide sequence