Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0212 and Echvi_0213 are separated by 552 nucleotides Echvi_0213 and Echvi_0214 are separated by 540 nucleotides
Echvi_0212: Echvi_0212 - Sulfite oxidase and related enzymes, at 231,260 to 232,507
_0212
Echvi_0213: Echvi_0213 - hypothetical protein, at 233,060 to 233,374
_0213
Echvi_0214: Echvi_0214 - Putative transcription activator, at 233,915 to 234,568
_0214
Position (kb) 233
234 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 232.109 kb on - strand, within Echvi_0212 at 232.220 kb on + strand, within Echvi_0212 at 232.221 kb on - strand, within Echvi_0212 at 232.247 kb on - strand, within Echvi_0212 at 232.264 kb on + strand, within Echvi_0212 at 232.292 kb on + strand, within Echvi_0212 at 232.292 kb on + strand, within Echvi_0212 at 232.292 kb on + strand, within Echvi_0212 at 232.306 kb on + strand, within Echvi_0212 at 232.330 kb on + strand, within Echvi_0212 at 232.350 kb on + strand, within Echvi_0212 at 232.351 kb on - strand, within Echvi_0212 at 232.351 kb on - strand, within Echvi_0212 at 232.370 kb on + strand, within Echvi_0212 at 232.545 kb on - strand at 232.754 kb on - strand at 232.758 kb on - strand at 232.889 kb on - strand at 232.918 kb on + strand at 232.919 kb on - strand at 232.919 kb on - strand at 233.050 kb on + strand at 233.050 kb on + strand at 233.050 kb on + strand at 233.050 kb on + strand at 233.076 kb on + strand at 233.079 kb on + strand at 233.080 kb on - strand at 233.102 kb on + strand, within Echvi_0213 at 233.103 kb on - strand, within Echvi_0213 at 233.103 kb on - strand, within Echvi_0213 at 233.106 kb on + strand, within Echvi_0213 at 233.106 kb on + strand, within Echvi_0213 at 233.119 kb on + strand, within Echvi_0213 at 233.136 kb on + strand, within Echvi_0213 at 233.136 kb on + strand, within Echvi_0213 at 233.136 kb on + strand, within Echvi_0213 at 233.137 kb on - strand, within Echvi_0213 at 233.155 kb on - strand, within Echvi_0213 at 233.178 kb on + strand, within Echvi_0213 at 233.263 kb on + strand, within Echvi_0213 at 233.373 kb on - strand at 233.582 kb on - strand at 233.643 kb on + strand at 233.643 kb on + strand at 233.653 kb on - strand at 233.716 kb on + strand at 233.734 kb on - strand at 233.818 kb on + strand at 233.843 kb on + strand at 234.091 kb on - strand, within Echvi_0214 at 234.091 kb on - strand, within Echvi_0214 at 234.094 kb on + strand, within Echvi_0214 at 234.094 kb on + strand, within Echvi_0214 at 234.095 kb on - strand, within Echvi_0214 at 234.095 kb on - strand, within Echvi_0214 at 234.095 kb on - strand, within Echvi_0214 at 234.141 kb on + strand, within Echvi_0214 at 234.142 kb on - strand, within Echvi_0214 at 234.142 kb on - strand, within Echvi_0214 at 234.145 kb on + strand, within Echvi_0214 at 234.146 kb on - strand, within Echvi_0214 at 234.163 kb on + strand, within Echvi_0214 at 234.163 kb on + strand, within Echvi_0214 at 234.207 kb on - strand, within Echvi_0214 at 234.207 kb on - strand, within Echvi_0214 at 234.237 kb on + strand, within Echvi_0214 at 234.237 kb on + strand, within Echvi_0214 at 234.237 kb on + strand, within Echvi_0214 at 234.237 kb on + strand, within Echvi_0214 at 234.237 kb on + strand, within Echvi_0214 at 234.238 kb on - strand, within Echvi_0214 at 234.238 kb on - strand, within Echvi_0214 at 234.238 kb on - strand, within Echvi_0214 at 234.330 kb on - strand, within Echvi_0214
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 232,109 - Echvi_0212 0.68 -1.2 232,220 + Echvi_0212 0.77 +0.3 232,221 - Echvi_0212 0.77 +0.3 232,247 - Echvi_0212 0.79 +0.8 232,264 + Echvi_0212 0.80 -0.3 232,292 + Echvi_0212 0.83 -0.4 232,292 + Echvi_0212 0.83 -0.2 232,292 + Echvi_0212 0.83 +0.3 232,306 + Echvi_0212 0.84 +0.0 232,330 + Echvi_0212 0.86 -0.2 232,350 + Echvi_0212 0.87 -1.5 232,351 - Echvi_0212 0.87 -1.1 232,351 - Echvi_0212 0.87 +0.6 232,370 + Echvi_0212 0.89 -0.1 232,545 - -0.2 232,754 - -0.1 232,758 - +0.5 232,889 - +0.6 232,918 + -1.5 232,919 - -0.4 232,919 - +0.1 233,050 + +0.4 233,050 + -0.2 233,050 + -0.8 233,050 + -2.6 233,076 + +1.0 233,079 + +1.5 233,080 - -0.4 233,102 + Echvi_0213 0.13 -1.8 233,103 - Echvi_0213 0.14 -0.4 233,103 - Echvi_0213 0.14 -0.1 233,106 + Echvi_0213 0.15 -0.7 233,106 + Echvi_0213 0.15 -1.2 233,119 + Echvi_0213 0.19 +0.1 233,136 + Echvi_0213 0.24 -1.2 233,136 + Echvi_0213 0.24 +1.4 233,136 + Echvi_0213 0.24 +0.5 233,137 - Echvi_0213 0.24 -1.2 233,155 - Echvi_0213 0.30 -1.4 233,178 + Echvi_0213 0.37 -1.7 233,263 + Echvi_0213 0.64 -0.2 233,373 - +0.2 233,582 - -0.6 233,643 + +0.6 233,643 + -0.2 233,653 - -0.4 233,716 + +1.1 233,734 - -0.2 233,818 + +0.3 233,843 + +0.2 234,091 - Echvi_0214 0.27 -0.2 234,091 - Echvi_0214 0.27 +2.9 234,094 + Echvi_0214 0.27 +1.8 234,094 + Echvi_0214 0.27 +0.5 234,095 - Echvi_0214 0.28 -1.1 234,095 - Echvi_0214 0.28 -0.3 234,095 - Echvi_0214 0.28 -1.2 234,141 + Echvi_0214 0.35 +0.1 234,142 - Echvi_0214 0.35 +1.2 234,142 - Echvi_0214 0.35 +0.3 234,145 + Echvi_0214 0.35 -0.5 234,146 - Echvi_0214 0.35 +0.8 234,163 + Echvi_0214 0.38 +0.5 234,163 + Echvi_0214 0.38 -0.1 234,207 - Echvi_0214 0.45 +1.6 234,207 - Echvi_0214 0.45 -0.4 234,237 + Echvi_0214 0.49 +0.3 234,237 + Echvi_0214 0.49 +0.2 234,237 + Echvi_0214 0.49 -0.3 234,237 + Echvi_0214 0.49 -0.2 234,237 + Echvi_0214 0.49 -0.8 234,238 - Echvi_0214 0.49 -0.8 234,238 - Echvi_0214 0.49 -0.6 234,238 - Echvi_0214 0.49 -0.2 234,330 - Echvi_0214 0.63 -0.4
Or see this region's nucleotide sequence