Experiment: Vanillin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4283 and PP_4284 are separated by 280 nucleotides PP_4284 and PP_4285 are separated by 436 nucleotides
PP_4283: PP_4283 - Transcriptional regulator, GntR family, at 4,873,777 to 4,874,532
_4283
PP_4284: PP_4284 - putative Transporter, at 4,874,813 to 4,876,162
_4284
PP_4285: PP_4285 - 5-hydroxyisourate hydrolase, at 4,876,599 to 4,876,952
_4285
Position (kb)
4874
4875
4876
4877 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4873.964 kb on + strand, within PP_4283 at 4873.965 kb on - strand at 4874.450 kb on + strand at 4874.558 kb on + strand at 4874.559 kb on - strand at 4874.571 kb on + strand at 4874.571 kb on + strand at 4874.571 kb on + strand at 4874.572 kb on - strand at 4874.572 kb on - strand at 4874.606 kb on - strand at 4874.606 kb on - strand at 4874.609 kb on + strand at 4874.610 kb on - strand at 4874.610 kb on - strand at 4874.610 kb on - strand at 4874.610 kb on - strand at 4874.610 kb on - strand at 4874.611 kb on + strand at 4874.611 kb on + strand at 4874.611 kb on + strand at 4874.611 kb on + strand at 4874.611 kb on + strand at 4874.611 kb on + strand at 4874.612 kb on - strand at 4874.612 kb on - strand at 4874.612 kb on - strand at 4874.612 kb on - strand at 4874.612 kb on - strand at 4874.612 kb on - strand at 4874.612 kb on - strand at 4874.612 kb on - strand at 4874.613 kb on + strand at 4874.613 kb on + strand at 4874.613 kb on + strand at 4874.613 kb on + strand at 4874.614 kb on - strand at 4874.614 kb on - strand at 4874.614 kb on - strand at 4874.614 kb on - strand at 4874.614 kb on - strand at 4874.614 kb on - strand at 4874.622 kb on + strand at 4874.622 kb on + strand at 4874.622 kb on + strand at 4874.623 kb on - strand at 4874.839 kb on + strand at 4874.840 kb on - strand at 4874.963 kb on + strand, within PP_4284 at 4874.963 kb on + strand, within PP_4284 at 4874.963 kb on + strand, within PP_4284 at 4874.963 kb on + strand, within PP_4284 at 4874.963 kb on + strand, within PP_4284 at 4874.964 kb on - strand, within PP_4284 at 4875.127 kb on + strand, within PP_4284 at 4875.127 kb on + strand, within PP_4284 at 4875.132 kb on - strand, within PP_4284 at 4875.156 kb on - strand, within PP_4284 at 4875.184 kb on - strand, within PP_4284 at 4875.431 kb on + strand, within PP_4284 at 4875.432 kb on - strand, within PP_4284 at 4875.779 kb on + strand, within PP_4284 at 4875.779 kb on + strand, within PP_4284 at 4875.779 kb on + strand, within PP_4284 at 4875.780 kb on - strand, within PP_4284 at 4875.780 kb on - strand, within PP_4284 at 4875.780 kb on - strand, within PP_4284 at 4875.780 kb on - strand, within PP_4284 at 4875.780 kb on - strand, within PP_4284 at 4875.780 kb on - strand, within PP_4284 at 4875.841 kb on - strand, within PP_4284 at 4875.841 kb on - strand, within PP_4284 at 4875.841 kb on - strand, within PP_4284 at 4875.841 kb on - strand, within PP_4284 at 4875.899 kb on + strand, within PP_4284 at 4875.900 kb on - strand, within PP_4284 at 4875.900 kb on - strand, within PP_4284 at 4875.923 kb on + strand, within PP_4284 at 4875.923 kb on + strand, within PP_4284 at 4875.923 kb on + strand, within PP_4284 at 4875.923 kb on + strand, within PP_4284 at 4875.923 kb on + strand, within PP_4284 at 4875.924 kb on - strand, within PP_4284 at 4875.924 kb on - strand, within PP_4284 at 4876.042 kb on + strand at 4876.042 kb on + strand at 4876.043 kb on - strand at 4876.064 kb on + strand at 4876.064 kb on + strand at 4876.064 kb on + strand at 4876.064 kb on + strand at 4876.065 kb on - strand at 4876.065 kb on - strand at 4876.065 kb on - strand at 4876.094 kb on + strand at 4876.095 kb on - strand at 4876.095 kb on - strand at 4876.199 kb on + strand at 4876.212 kb on - strand at 4876.212 kb on - strand at 4876.290 kb on - strand at 4876.311 kb on + strand at 4876.335 kb on - strand at 4876.346 kb on + strand at 4876.347 kb on - strand at 4876.347 kb on - strand at 4876.446 kb on + strand at 4876.446 kb on + strand at 4876.481 kb on - strand at 4876.481 kb on - strand at 4876.575 kb on + strand at 4876.575 kb on + strand at 4876.576 kb on - strand at 4876.576 kb on - strand at 4876.576 kb on - strand at 4876.589 kb on + strand at 4876.600 kb on + strand at 4876.600 kb on + strand at 4876.600 kb on + strand at 4876.601 kb on - strand at 4876.601 kb on - strand at 4876.601 kb on - strand at 4876.612 kb on + strand at 4876.612 kb on + strand at 4876.622 kb on - strand at 4876.622 kb on - strand at 4876.622 kb on - strand at 4876.742 kb on - strand, within PP_4285 at 4876.744 kb on + strand, within PP_4285 at 4876.744 kb on + strand, within PP_4285 at 4876.744 kb on + strand, within PP_4285 at 4876.745 kb on - strand, within PP_4285 at 4876.745 kb on - strand, within PP_4285 at 4876.745 kb on - strand, within PP_4285 at 4876.745 kb on - strand, within PP_4285 at 4876.771 kb on + strand, within PP_4285 at 4876.929 kb on + strand at 4876.929 kb on + strand at 4877.011 kb on - strand at 4877.042 kb on - strand at 4877.133 kb on + strand at 4877.133 kb on + strand at 4877.134 kb on - strand at 4877.134 kb on - strand at 4877.144 kb on + strand at 4877.144 kb on + strand at 4877.144 kb on + strand at 4877.144 kb on + strand at 4877.144 kb on + strand at 4877.145 kb on - strand at 4877.145 kb on - strand at 4877.145 kb on - strand at 4877.145 kb on - strand at 4877.145 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin (C) remove 4,873,964 + PP_4283 0.25 -0.2 4,873,965 - +1.0 4,874,450 + -0.8 4,874,558 + -0.1 4,874,559 - +0.3 4,874,571 + -0.5 4,874,571 + -2.4 4,874,571 + -0.7 4,874,572 - -1.0 4,874,572 - -0.5 4,874,606 - -0.8 4,874,606 - +0.2 4,874,609 + +0.0 4,874,610 - -2.5 4,874,610 - +0.3 4,874,610 - +0.0 4,874,610 - -0.4 4,874,610 - +0.7 4,874,611 + +0.4 4,874,611 + +0.2 4,874,611 + -0.1 4,874,611 + -0.4 4,874,611 + +0.4 4,874,611 + +0.0 4,874,612 - -1.5 4,874,612 - +0.1 4,874,612 - -0.4 4,874,612 - +0.6 4,874,612 - +0.3 4,874,612 - +0.5 4,874,612 - -0.2 4,874,612 - -0.0 4,874,613 + -0.9 4,874,613 + -0.1 4,874,613 + +0.0 4,874,613 + -1.3 4,874,614 - -0.2 4,874,614 - -0.1 4,874,614 - -0.2 4,874,614 - +0.6 4,874,614 - +0.5 4,874,614 - +0.3 4,874,622 + -0.3 4,874,622 + -0.4 4,874,622 + -1.1 4,874,623 - -0.7 4,874,839 + -0.5 4,874,840 - -0.5 4,874,963 + PP_4284 0.11 +0.5 4,874,963 + PP_4284 0.11 -1.4 4,874,963 + PP_4284 0.11 -0.5 4,874,963 + PP_4284 0.11 +0.8 4,874,963 + PP_4284 0.11 +1.3 4,874,964 - PP_4284 0.11 +0.3 4,875,127 + PP_4284 0.23 -0.3 4,875,127 + PP_4284 0.23 +0.1 4,875,132 - PP_4284 0.24 -0.5 4,875,156 - PP_4284 0.25 +0.1 4,875,184 - PP_4284 0.27 -0.5 4,875,431 + PP_4284 0.46 -0.7 4,875,432 - PP_4284 0.46 +0.1 4,875,779 + PP_4284 0.72 +1.0 4,875,779 + PP_4284 0.72 +0.8 4,875,779 + PP_4284 0.72 +0.5 4,875,780 - PP_4284 0.72 -1.3 4,875,780 - PP_4284 0.72 -0.5 4,875,780 - PP_4284 0.72 -2.0 4,875,780 - PP_4284 0.72 -0.3 4,875,780 - PP_4284 0.72 +0.9 4,875,780 - PP_4284 0.72 -0.3 4,875,841 - PP_4284 0.76 -0.6 4,875,841 - PP_4284 0.76 -0.8 4,875,841 - PP_4284 0.76 -2.0 4,875,841 - PP_4284 0.76 -0.4 4,875,899 + PP_4284 0.80 -1.1 4,875,900 - PP_4284 0.81 -0.9 4,875,900 - PP_4284 0.81 -0.5 4,875,923 + PP_4284 0.82 -1.0 4,875,923 + PP_4284 0.82 -0.3 4,875,923 + PP_4284 0.82 -0.4 4,875,923 + PP_4284 0.82 -0.6 4,875,923 + PP_4284 0.82 -0.9 4,875,924 - PP_4284 0.82 -0.2 4,875,924 - PP_4284 0.82 +0.2 4,876,042 + +0.8 4,876,042 + +0.6 4,876,043 - -0.7 4,876,064 + -0.1 4,876,064 + -1.0 4,876,064 + -0.3 4,876,064 + -0.9 4,876,065 - +0.5 4,876,065 - +0.2 4,876,065 - +1.0 4,876,094 + -0.1 4,876,095 - -1.1 4,876,095 - +1.5 4,876,199 + +0.5 4,876,212 - +0.9 4,876,212 - +0.4 4,876,290 - +0.5 4,876,311 + -0.2 4,876,335 - +0.0 4,876,346 + +0.3 4,876,347 - +1.5 4,876,347 - +0.7 4,876,446 + +0.9 4,876,446 + -0.8 4,876,481 - -0.4 4,876,481 - +0.2 4,876,575 + +0.8 4,876,575 + -0.7 4,876,576 - -0.0 4,876,576 - -0.6 4,876,576 - +0.5 4,876,589 + +1.2 4,876,600 + +0.5 4,876,600 + +0.4 4,876,600 + +0.3 4,876,601 - -0.9 4,876,601 - -0.1 4,876,601 - +0.2 4,876,612 + +0.5 4,876,612 + -0.2 4,876,622 - -0.2 4,876,622 - -0.6 4,876,622 - -0.4 4,876,742 - PP_4285 0.40 +0.5 4,876,744 + PP_4285 0.41 +0.7 4,876,744 + PP_4285 0.41 -0.2 4,876,744 + PP_4285 0.41 -0.9 4,876,745 - PP_4285 0.41 +0.7 4,876,745 - PP_4285 0.41 -0.8 4,876,745 - PP_4285 0.41 +0.4 4,876,745 - PP_4285 0.41 -0.4 4,876,771 + PP_4285 0.49 +0.1 4,876,929 + +1.2 4,876,929 + +0.1 4,877,011 - -0.2 4,877,042 - +0.5 4,877,133 + +0.9 4,877,133 + +1.8 4,877,134 - -0.8 4,877,134 - +1.2 4,877,144 + -0.5 4,877,144 + +0.2 4,877,144 + +0.8 4,877,144 + -0.5 4,877,144 + -0.5 4,877,145 - +0.2 4,877,145 - +0.3 4,877,145 - +0.6 4,877,145 - -1.0 4,877,145 - -0.0
Or see this region's nucleotide sequence