Strain Fitness in Pseudomonas putida KT2440 around PP_4284

Experiment: Vanillin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4283 and PP_4284 are separated by 280 nucleotidesPP_4284 and PP_4285 are separated by 436 nucleotides PP_4283: PP_4283 - Transcriptional regulator, GntR family, at 4,873,777 to 4,874,532 _4283 PP_4284: PP_4284 - putative Transporter, at 4,874,813 to 4,876,162 _4284 PP_4285: PP_4285 - 5-hydroxyisourate hydrolase, at 4,876,599 to 4,876,952 _4285 Position (kb) 4874 4875 4876 4877Strain fitness (log2 ratio) -2 -1 0 1 2at 4873.964 kb on + strand, within PP_4283at 4873.965 kb on - strandat 4874.450 kb on + strandat 4874.558 kb on + strandat 4874.559 kb on - strandat 4874.571 kb on + strandat 4874.571 kb on + strandat 4874.571 kb on + strandat 4874.572 kb on - strandat 4874.572 kb on - strandat 4874.606 kb on - strandat 4874.606 kb on - strandat 4874.609 kb on + strandat 4874.610 kb on - strandat 4874.610 kb on - strandat 4874.610 kb on - strandat 4874.610 kb on - strandat 4874.610 kb on - strandat 4874.611 kb on + strandat 4874.611 kb on + strandat 4874.611 kb on + strandat 4874.611 kb on + strandat 4874.611 kb on + strandat 4874.611 kb on + strandat 4874.612 kb on - strandat 4874.612 kb on - strandat 4874.612 kb on - strandat 4874.612 kb on - strandat 4874.612 kb on - strandat 4874.612 kb on - strandat 4874.612 kb on - strandat 4874.612 kb on - strandat 4874.613 kb on + strandat 4874.613 kb on + strandat 4874.613 kb on + strandat 4874.613 kb on + strandat 4874.614 kb on - strandat 4874.614 kb on - strandat 4874.614 kb on - strandat 4874.614 kb on - strandat 4874.614 kb on - strandat 4874.614 kb on - strandat 4874.622 kb on + strandat 4874.622 kb on + strandat 4874.622 kb on + strandat 4874.623 kb on - strandat 4874.839 kb on + strandat 4874.840 kb on - strandat 4874.963 kb on + strand, within PP_4284at 4874.963 kb on + strand, within PP_4284at 4874.963 kb on + strand, within PP_4284at 4874.963 kb on + strand, within PP_4284at 4874.963 kb on + strand, within PP_4284at 4874.964 kb on - strand, within PP_4284at 4875.127 kb on + strand, within PP_4284at 4875.127 kb on + strand, within PP_4284at 4875.132 kb on - strand, within PP_4284at 4875.156 kb on - strand, within PP_4284at 4875.184 kb on - strand, within PP_4284at 4875.431 kb on + strand, within PP_4284at 4875.432 kb on - strand, within PP_4284at 4875.779 kb on + strand, within PP_4284at 4875.779 kb on + strand, within PP_4284at 4875.779 kb on + strand, within PP_4284at 4875.780 kb on - strand, within PP_4284at 4875.780 kb on - strand, within PP_4284at 4875.780 kb on - strand, within PP_4284at 4875.780 kb on - strand, within PP_4284at 4875.780 kb on - strand, within PP_4284at 4875.780 kb on - strand, within PP_4284at 4875.841 kb on - strand, within PP_4284at 4875.841 kb on - strand, within PP_4284at 4875.841 kb on - strand, within PP_4284at 4875.841 kb on - strand, within PP_4284at 4875.899 kb on + strand, within PP_4284at 4875.900 kb on - strand, within PP_4284at 4875.900 kb on - strand, within PP_4284at 4875.923 kb on + strand, within PP_4284at 4875.923 kb on + strand, within PP_4284at 4875.923 kb on + strand, within PP_4284at 4875.923 kb on + strand, within PP_4284at 4875.923 kb on + strand, within PP_4284at 4875.924 kb on - strand, within PP_4284at 4875.924 kb on - strand, within PP_4284at 4876.042 kb on + strandat 4876.042 kb on + strandat 4876.043 kb on - strandat 4876.064 kb on + strandat 4876.064 kb on + strandat 4876.064 kb on + strandat 4876.064 kb on + strandat 4876.065 kb on - strandat 4876.065 kb on - strandat 4876.065 kb on - strandat 4876.094 kb on + strandat 4876.095 kb on - strandat 4876.095 kb on - strandat 4876.199 kb on + strandat 4876.212 kb on - strandat 4876.212 kb on - strandat 4876.290 kb on - strandat 4876.311 kb on + strandat 4876.335 kb on - strandat 4876.346 kb on + strandat 4876.347 kb on - strandat 4876.347 kb on - strandat 4876.446 kb on + strandat 4876.446 kb on + strandat 4876.481 kb on - strandat 4876.481 kb on - strandat 4876.575 kb on + strandat 4876.575 kb on + strandat 4876.576 kb on - strandat 4876.576 kb on - strandat 4876.576 kb on - strandat 4876.589 kb on + strandat 4876.600 kb on + strandat 4876.600 kb on + strandat 4876.600 kb on + strandat 4876.601 kb on - strandat 4876.601 kb on - strandat 4876.601 kb on - strandat 4876.612 kb on + strandat 4876.612 kb on + strandat 4876.622 kb on - strandat 4876.622 kb on - strandat 4876.622 kb on - strandat 4876.742 kb on - strand, within PP_4285at 4876.744 kb on + strand, within PP_4285at 4876.744 kb on + strand, within PP_4285at 4876.744 kb on + strand, within PP_4285at 4876.745 kb on - strand, within PP_4285at 4876.745 kb on - strand, within PP_4285at 4876.745 kb on - strand, within PP_4285at 4876.745 kb on - strand, within PP_4285at 4876.771 kb on + strand, within PP_4285at 4876.929 kb on + strandat 4876.929 kb on + strandat 4877.011 kb on - strandat 4877.042 kb on - strandat 4877.133 kb on + strandat 4877.133 kb on + strandat 4877.134 kb on - strandat 4877.134 kb on - strandat 4877.144 kb on + strandat 4877.144 kb on + strandat 4877.144 kb on + strandat 4877.144 kb on + strandat 4877.144 kb on + strandat 4877.145 kb on - strandat 4877.145 kb on - strandat 4877.145 kb on - strandat 4877.145 kb on - strandat 4877.145 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin (C)
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4,873,964 + PP_4283 0.25 -0.2
4,873,965 - +1.0
4,874,450 + -0.8
4,874,558 + -0.1
4,874,559 - +0.3
4,874,571 + -0.5
4,874,571 + -2.4
4,874,571 + -0.7
4,874,572 - -1.0
4,874,572 - -0.5
4,874,606 - -0.8
4,874,606 - +0.2
4,874,609 + +0.0
4,874,610 - -2.5
4,874,610 - +0.3
4,874,610 - +0.0
4,874,610 - -0.4
4,874,610 - +0.7
4,874,611 + +0.4
4,874,611 + +0.2
4,874,611 + -0.1
4,874,611 + -0.4
4,874,611 + +0.4
4,874,611 + +0.0
4,874,612 - -1.5
4,874,612 - +0.1
4,874,612 - -0.4
4,874,612 - +0.6
4,874,612 - +0.3
4,874,612 - +0.5
4,874,612 - -0.2
4,874,612 - -0.0
4,874,613 + -0.9
4,874,613 + -0.1
4,874,613 + +0.0
4,874,613 + -1.3
4,874,614 - -0.2
4,874,614 - -0.1
4,874,614 - -0.2
4,874,614 - +0.6
4,874,614 - +0.5
4,874,614 - +0.3
4,874,622 + -0.3
4,874,622 + -0.4
4,874,622 + -1.1
4,874,623 - -0.7
4,874,839 + -0.5
4,874,840 - -0.5
4,874,963 + PP_4284 0.11 +0.5
4,874,963 + PP_4284 0.11 -1.4
4,874,963 + PP_4284 0.11 -0.5
4,874,963 + PP_4284 0.11 +0.8
4,874,963 + PP_4284 0.11 +1.3
4,874,964 - PP_4284 0.11 +0.3
4,875,127 + PP_4284 0.23 -0.3
4,875,127 + PP_4284 0.23 +0.1
4,875,132 - PP_4284 0.24 -0.5
4,875,156 - PP_4284 0.25 +0.1
4,875,184 - PP_4284 0.27 -0.5
4,875,431 + PP_4284 0.46 -0.7
4,875,432 - PP_4284 0.46 +0.1
4,875,779 + PP_4284 0.72 +1.0
4,875,779 + PP_4284 0.72 +0.8
4,875,779 + PP_4284 0.72 +0.5
4,875,780 - PP_4284 0.72 -1.3
4,875,780 - PP_4284 0.72 -0.5
4,875,780 - PP_4284 0.72 -2.0
4,875,780 - PP_4284 0.72 -0.3
4,875,780 - PP_4284 0.72 +0.9
4,875,780 - PP_4284 0.72 -0.3
4,875,841 - PP_4284 0.76 -0.6
4,875,841 - PP_4284 0.76 -0.8
4,875,841 - PP_4284 0.76 -2.0
4,875,841 - PP_4284 0.76 -0.4
4,875,899 + PP_4284 0.80 -1.1
4,875,900 - PP_4284 0.81 -0.9
4,875,900 - PP_4284 0.81 -0.5
4,875,923 + PP_4284 0.82 -1.0
4,875,923 + PP_4284 0.82 -0.3
4,875,923 + PP_4284 0.82 -0.4
4,875,923 + PP_4284 0.82 -0.6
4,875,923 + PP_4284 0.82 -0.9
4,875,924 - PP_4284 0.82 -0.2
4,875,924 - PP_4284 0.82 +0.2
4,876,042 + +0.8
4,876,042 + +0.6
4,876,043 - -0.7
4,876,064 + -0.1
4,876,064 + -1.0
4,876,064 + -0.3
4,876,064 + -0.9
4,876,065 - +0.5
4,876,065 - +0.2
4,876,065 - +1.0
4,876,094 + -0.1
4,876,095 - -1.1
4,876,095 - +1.5
4,876,199 + +0.5
4,876,212 - +0.9
4,876,212 - +0.4
4,876,290 - +0.5
4,876,311 + -0.2
4,876,335 - +0.0
4,876,346 + +0.3
4,876,347 - +1.5
4,876,347 - +0.7
4,876,446 + +0.9
4,876,446 + -0.8
4,876,481 - -0.4
4,876,481 - +0.2
4,876,575 + +0.8
4,876,575 + -0.7
4,876,576 - -0.0
4,876,576 - -0.6
4,876,576 - +0.5
4,876,589 + +1.2
4,876,600 + +0.5
4,876,600 + +0.4
4,876,600 + +0.3
4,876,601 - -0.9
4,876,601 - -0.1
4,876,601 - +0.2
4,876,612 + +0.5
4,876,612 + -0.2
4,876,622 - -0.2
4,876,622 - -0.6
4,876,622 - -0.4
4,876,742 - PP_4285 0.40 +0.5
4,876,744 + PP_4285 0.41 +0.7
4,876,744 + PP_4285 0.41 -0.2
4,876,744 + PP_4285 0.41 -0.9
4,876,745 - PP_4285 0.41 +0.7
4,876,745 - PP_4285 0.41 -0.8
4,876,745 - PP_4285 0.41 +0.4
4,876,745 - PP_4285 0.41 -0.4
4,876,771 + PP_4285 0.49 +0.1
4,876,929 + +1.2
4,876,929 + +0.1
4,877,011 - -0.2
4,877,042 - +0.5
4,877,133 + +0.9
4,877,133 + +1.8
4,877,134 - -0.8
4,877,134 - +1.2
4,877,144 + -0.5
4,877,144 + +0.2
4,877,144 + +0.8
4,877,144 + -0.5
4,877,144 + -0.5
4,877,145 - +0.2
4,877,145 - +0.3
4,877,145 - +0.6
4,877,145 - -1.0
4,877,145 - -0.0

Or see this region's nucleotide sequence