Strain Fitness in Pseudomonas putida KT2440 around PP_4278

Experiment: Vanillin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4276 and PP_4277 are separated by 3 nucleotidesPP_4277 and PP_4278 are separated by 268 nucleotidesPP_4278 and PP_4279 overlap by 8 nucleotides PP_4276: PP_4276 - Chromosome partition protein Smc, at 4,862,384 to 4,865,872 _4276 PP_4277: PP_4277 - Transcriptional regulator, GntR family, at 4,865,876 to 4,866,535 _4277 PP_4278: PP_4278 - xanthine dehydrogenase subunit XdhA, at 4,866,804 to 4,868,258 _4278 PP_4279: PP_4279 - xanthine dehydrogenase subunit XdhB, at 4,868,251 to 4,870,650 _4279 Position (kb) 4866 4867 4868 4869Strain fitness (log2 ratio) -2 -1 0 1at 4865.926 kb on - strandat 4865.926 kb on - strandat 4866.004 kb on - strand, within PP_4277at 4866.042 kb on + strand, within PP_4277at 4866.042 kb on + strand, within PP_4277at 4866.042 kb on + strand, within PP_4277at 4866.042 kb on + strand, within PP_4277at 4866.042 kb on + strand, within PP_4277at 4866.042 kb on + strand, within PP_4277at 4866.042 kb on + strand, within PP_4277at 4866.042 kb on + strand, within PP_4277at 4866.043 kb on - strand, within PP_4277at 4866.043 kb on - strand, within PP_4277at 4866.043 kb on - strand, within PP_4277at 4866.043 kb on - strand, within PP_4277at 4866.045 kb on + strand, within PP_4277at 4866.045 kb on + strand, within PP_4277at 4866.045 kb on + strand, within PP_4277at 4866.046 kb on - strand, within PP_4277at 4866.046 kb on - strand, within PP_4277at 4866.114 kb on + strand, within PP_4277at 4866.115 kb on - strand, within PP_4277at 4866.267 kb on + strand, within PP_4277at 4866.267 kb on + strand, within PP_4277at 4866.267 kb on + strand, within PP_4277at 4866.267 kb on + strand, within PP_4277at 4866.267 kb on + strandat 4866.267 kb on + strand, within PP_4277at 4866.268 kb on - strand, within PP_4277at 4866.268 kb on - strand, within PP_4277at 4866.442 kb on + strand, within PP_4277at 4866.489 kb on + strandat 4866.580 kb on + strandat 4866.580 kb on + strandat 4866.580 kb on + strandat 4866.580 kb on + strandat 4866.585 kb on + strandat 4866.585 kb on + strandat 4866.586 kb on - strandat 4866.586 kb on - strandat 4866.586 kb on - strandat 4866.622 kb on + strandat 4866.623 kb on - strandat 4866.660 kb on + strandat 4866.661 kb on - strandat 4866.661 kb on - strandat 4866.661 kb on - strandat 4866.661 kb on - strandat 4866.661 kb on - strandat 4866.661 kb on - strandat 4866.668 kb on + strandat 4866.668 kb on + strandat 4866.668 kb on + strandat 4866.668 kb on + strandat 4866.668 kb on + strandat 4866.669 kb on - strandat 4866.669 kb on - strandat 4866.669 kb on - strandat 4866.671 kb on + strandat 4866.672 kb on - strandat 4866.672 kb on - strandat 4866.672 kb on - strandat 4866.745 kb on + strandat 4866.746 kb on - strandat 4866.746 kb on - strandat 4866.746 kb on - strandat 4866.746 kb on - strandat 4866.760 kb on + strandat 4866.760 kb on + strandat 4866.761 kb on - strandat 4866.761 kb on - strandat 4866.780 kb on + strandat 4866.780 kb on + strandat 4866.780 kb on + strandat 4866.780 kb on + strandat 4866.836 kb on + strandat 4866.857 kb on + strandat 4866.857 kb on + strandat 4866.857 kb on + strandat 4866.857 kb on + strandat 4866.858 kb on - strandat 4866.858 kb on - strandat 4866.858 kb on - strandat 4866.858 kb on - strandat 4866.877 kb on - strandat 4866.877 kb on - strandat 4867.530 kb on + strand, within PP_4278at 4867.530 kb on + strand, within PP_4278at 4867.530 kb on + strand, within PP_4278at 4867.531 kb on - strand, within PP_4278at 4867.531 kb on - strand, within PP_4278at 4867.531 kb on - strand, within PP_4278at 4867.531 kb on - strand, within PP_4278at 4867.531 kb on - strand, within PP_4278at 4867.531 kb on - strand, within PP_4278at 4867.531 kb on - strand, within PP_4278at 4867.617 kb on + strand, within PP_4278at 4867.639 kb on - strand, within PP_4278at 4867.821 kb on + strand, within PP_4278at 4867.822 kb on - strand, within PP_4278at 4867.822 kb on - strand, within PP_4278at 4867.918 kb on - strand, within PP_4278at 4867.919 kb on + strand, within PP_4278at 4867.919 kb on + strand, within PP_4278at 4867.920 kb on - strand, within PP_4278at 4867.920 kb on - strand, within PP_4278at 4867.920 kb on - strand, within PP_4278at 4868.166 kb on + strandat 4868.166 kb on + strandat 4868.203 kb on - strandat 4868.226 kb on + strandat 4868.226 kb on + strandat 4868.226 kb on + strandat 4868.227 kb on - strandat 4868.227 kb on - strandat 4868.227 kb on - strandat 4868.227 kb on - strandat 4868.250 kb on + strandat 4868.250 kb on + strandat 4868.251 kb on - strandat 4868.251 kb on - strandat 4868.257 kb on - strandat 4868.364 kb on - strandat 4868.380 kb on + strandat 4868.380 kb on + strandat 4868.381 kb on - strandat 4868.381 kb on - strandat 4868.381 kb on - strandat 4868.381 kb on - strandat 4868.381 kb on - strandat 4868.422 kb on + strandat 4868.422 kb on + strandat 4868.422 kb on + strandat 4868.422 kb on + strandat 4868.422 kb on + strandat 4868.422 kb on + strandat 4868.422 kb on + strandat 4868.422 kb on - strandat 4868.423 kb on - strandat 4868.423 kb on - strandat 4868.423 kb on - strandat 4868.423 kb on - strandat 4868.423 kb on - strandat 4868.423 kb on - strandat 4868.423 kb on - strandat 4868.431 kb on - strandat 4868.482 kb on + strandat 4868.483 kb on - strandat 4868.483 kb on - strandat 4868.502 kb on + strand, within PP_4279at 4868.674 kb on + strand, within PP_4279at 4868.674 kb on + strand, within PP_4279at 4868.836 kb on + strand, within PP_4279at 4868.837 kb on - strand, within PP_4279at 4868.868 kb on + strand, within PP_4279at 4868.869 kb on - strand, within PP_4279at 4868.893 kb on + strand, within PP_4279at 4868.893 kb on + strand, within PP_4279at 4868.894 kb on - strand, within PP_4279at 4868.942 kb on + strand, within PP_4279at 4869.048 kb on - strand, within PP_4279at 4869.134 kb on - strand, within PP_4279at 4869.143 kb on - strand, within PP_4279at 4869.143 kb on - strand, within PP_4279

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin (C)
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4,865,926 - -0.7
4,865,926 - +0.9
4,866,004 - PP_4277 0.19 +0.2
4,866,042 + PP_4277 0.25 -1.2
4,866,042 + PP_4277 0.25 +0.9
4,866,042 + PP_4277 0.25 +0.8
4,866,042 + PP_4277 0.25 +0.8
4,866,042 + PP_4277 0.25 +0.6
4,866,042 + PP_4277 0.25 +0.1
4,866,042 + PP_4277 0.25 -0.5
4,866,042 + PP_4277 0.25 +1.0
4,866,043 - PP_4277 0.25 +0.6
4,866,043 - PP_4277 0.25 +1.2
4,866,043 - PP_4277 0.25 -0.5
4,866,043 - PP_4277 0.25 +0.0
4,866,045 + PP_4277 0.26 +1.2
4,866,045 + PP_4277 0.26 +0.6
4,866,045 + PP_4277 0.26 -0.4
4,866,046 - PP_4277 0.26 -0.8
4,866,046 - PP_4277 0.26 +0.6
4,866,114 + PP_4277 0.36 +1.2
4,866,115 - PP_4277 0.36 +0.5
4,866,267 + PP_4277 0.59 +1.1
4,866,267 + PP_4277 0.59 -0.4
4,866,267 + PP_4277 0.59 +0.8
4,866,267 + PP_4277 0.59 +0.3
4,866,267 + +0.7
4,866,267 + PP_4277 0.59 -0.6
4,866,268 - PP_4277 0.59 -0.0
4,866,268 - PP_4277 0.59 +1.2
4,866,442 + PP_4277 0.86 +1.1
4,866,489 + +1.4
4,866,580 + -0.2
4,866,580 + +0.0
4,866,580 + +0.4
4,866,580 + -0.3
4,866,585 + -2.1
4,866,585 + -0.2
4,866,586 - -0.0
4,866,586 - -0.1
4,866,586 - +0.3
4,866,622 + -0.3
4,866,623 - -0.6
4,866,660 + -0.2
4,866,661 - +0.6
4,866,661 - -0.2
4,866,661 - -0.9
4,866,661 - -0.0
4,866,661 - +1.0
4,866,661 - +1.1
4,866,668 + +1.4
4,866,668 + +0.5
4,866,668 + +0.4
4,866,668 + +0.5
4,866,668 + +0.0
4,866,669 - +0.6
4,866,669 - +0.3
4,866,669 - +1.3
4,866,671 + +0.0
4,866,672 - +0.0
4,866,672 - -0.0
4,866,672 - +0.0
4,866,745 + -1.5
4,866,746 - +0.8
4,866,746 - -1.0
4,866,746 - -0.4
4,866,746 - -1.2
4,866,760 + +0.1
4,866,760 + +0.1
4,866,761 - +1.0
4,866,761 - -0.2
4,866,780 + +0.2
4,866,780 + +0.4
4,866,780 + +0.6
4,866,780 + -0.2
4,866,836 + +0.2
4,866,857 + +0.5
4,866,857 + +0.9
4,866,857 + +0.0
4,866,857 + +0.0
4,866,858 - -0.8
4,866,858 - +0.9
4,866,858 - -0.3
4,866,858 - -1.1
4,866,877 - -0.0
4,866,877 - -1.2
4,867,530 + PP_4278 0.50 +1.0
4,867,530 + PP_4278 0.50 -1.1
4,867,530 + PP_4278 0.50 -0.5
4,867,531 - PP_4278 0.50 -0.2
4,867,531 - PP_4278 0.50 +0.5
4,867,531 - PP_4278 0.50 -0.6
4,867,531 - PP_4278 0.50 +0.1
4,867,531 - PP_4278 0.50 -0.8
4,867,531 - PP_4278 0.50 +0.2
4,867,531 - PP_4278 0.50 -1.2
4,867,617 + PP_4278 0.56 -0.2
4,867,639 - PP_4278 0.57 +0.7
4,867,821 + PP_4278 0.70 -0.3
4,867,822 - PP_4278 0.70 +1.0
4,867,822 - PP_4278 0.70 +0.2
4,867,918 - PP_4278 0.77 -0.6
4,867,919 + PP_4278 0.77 -0.4
4,867,919 + PP_4278 0.77 +0.0
4,867,920 - PP_4278 0.77 +0.6
4,867,920 - PP_4278 0.77 +0.8
4,867,920 - PP_4278 0.77 -0.6
4,868,166 + -0.2
4,868,166 + +0.4
4,868,203 - -1.0
4,868,226 + -0.6
4,868,226 + -1.0
4,868,226 + +1.5
4,868,227 - +0.7
4,868,227 - -0.4
4,868,227 - -1.3
4,868,227 - -0.3
4,868,250 + +0.7
4,868,250 + +0.5
4,868,251 - -0.4
4,868,251 - +0.6
4,868,257 - -0.1
4,868,364 - +0.4
4,868,380 + -0.5
4,868,380 + +0.1
4,868,381 - -0.5
4,868,381 - +0.3
4,868,381 - +0.1
4,868,381 - +0.1
4,868,381 - +1.2
4,868,422 + -0.1
4,868,422 + +0.2
4,868,422 + -0.8
4,868,422 + +0.7
4,868,422 + +0.2
4,868,422 + +0.9
4,868,422 + +0.0
4,868,422 - -2.3
4,868,423 - -0.5
4,868,423 - -0.1
4,868,423 - -0.1
4,868,423 - +0.5
4,868,423 - +0.1
4,868,423 - +0.5
4,868,423 - +0.3
4,868,431 - -1.3
4,868,482 + +0.7
4,868,483 - +0.6
4,868,483 - -0.6
4,868,502 + PP_4279 0.10 -0.0
4,868,674 + PP_4279 0.18 -0.3
4,868,674 + PP_4279 0.18 +1.3
4,868,836 + PP_4279 0.24 -1.0
4,868,837 - PP_4279 0.24 -0.0
4,868,868 + PP_4279 0.26 +1.0
4,868,869 - PP_4279 0.26 +0.7
4,868,893 + PP_4279 0.27 -0.3
4,868,893 + PP_4279 0.27 -2.0
4,868,894 - PP_4279 0.27 -0.9
4,868,942 + PP_4279 0.29 +0.2
4,869,048 - PP_4279 0.33 -0.1
4,869,134 - PP_4279 0.37 -1.3
4,869,143 - PP_4279 0.37 +0.2
4,869,143 - PP_4279 0.37 +0.2

Or see this region's nucleotide sequence