Strain Fitness in Pseudomonas putida KT2440 around PP_3655

Experiment: Vanillin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3653 and PP_3654 are separated by 111 nucleotidesPP_3654 and PP_3655 are separated by 396 nucleotidesPP_3655 and PP_3656 are separated by 150 nucleotides PP_3653: PP_3653 - Transporter, LysE family, at 4,148,823 to 4,149,437 _3653 PP_3654: PP_3654 - leucine-responsive regulatory protein, at 4,149,549 to 4,150,001 _3654 PP_3655: PP_3655 - Cytosine/purine/uracil/thiamine/allantoin permease family protein, at 4,150,398 to 4,151,810 _3655 PP_3656: PP_3656 - putative Aromatic compound-specific porin, at 4,151,961 to 4,153,223 _3656 Position (kb) 4150 4151 4152Strain fitness (log2 ratio) -2 -1 0 1at 4149.432 kb on - strandat 4149.450 kb on + strandat 4149.450 kb on + strandat 4149.455 kb on - strandat 4149.696 kb on + strand, within PP_3654at 4149.749 kb on - strand, within PP_3654at 4149.749 kb on - strand, within PP_3654at 4149.769 kb on + strand, within PP_3654at 4149.906 kb on + strandat 4149.907 kb on - strand, within PP_3654at 4149.907 kb on - strand, within PP_3654at 4149.907 kb on - strand, within PP_3654at 4149.927 kb on - strand, within PP_3654at 4149.927 kb on - strand, within PP_3654at 4149.927 kb on - strand, within PP_3654at 4149.999 kb on + strandat 4150.000 kb on - strandat 4150.000 kb on - strandat 4150.000 kb on - strandat 4150.059 kb on - strandat 4150.059 kb on - strandat 4150.060 kb on - strandat 4150.269 kb on + strandat 4150.279 kb on + strandat 4150.279 kb on + strandat 4150.279 kb on + strandat 4150.279 kb on + strandat 4150.279 kb on + strandat 4150.279 kb on + strandat 4150.279 kb on + strandat 4150.280 kb on - strandat 4150.280 kb on - strandat 4150.280 kb on - strandat 4150.280 kb on - strandat 4150.280 kb on - strandat 4150.280 kb on - strandat 4150.280 kb on - strandat 4150.280 kb on - strandat 4150.280 kb on - strandat 4150.280 kb on - strandat 4150.283 kb on + strandat 4150.283 kb on + strandat 4150.377 kb on + strandat 4150.378 kb on - strandat 4150.481 kb on - strandat 4150.576 kb on + strand, within PP_3655at 4150.577 kb on - strand, within PP_3655at 4150.577 kb on - strand, within PP_3655at 4150.577 kb on - strand, within PP_3655at 4150.740 kb on + strand, within PP_3655at 4150.740 kb on + strand, within PP_3655at 4150.740 kb on + strand, within PP_3655at 4150.741 kb on - strand, within PP_3655at 4150.741 kb on - strand, within PP_3655at 4150.741 kb on - strand, within PP_3655at 4150.741 kb on - strand, within PP_3655at 4150.741 kb on - strand, within PP_3655at 4150.741 kb on - strand, within PP_3655at 4150.942 kb on - strand, within PP_3655at 4151.055 kb on + strand, within PP_3655at 4151.055 kb on + strand, within PP_3655at 4151.056 kb on - strand, within PP_3655at 4151.076 kb on + strand, within PP_3655at 4151.121 kb on + strand, within PP_3655at 4151.121 kb on + strand, within PP_3655at 4151.121 kb on + strand, within PP_3655at 4151.122 kb on - strand, within PP_3655at 4151.283 kb on - strand, within PP_3655at 4151.298 kb on + strand, within PP_3655at 4151.298 kb on + strand, within PP_3655at 4151.299 kb on - strand, within PP_3655at 4151.299 kb on - strand, within PP_3655at 4151.299 kb on - strand, within PP_3655at 4151.343 kb on + strand, within PP_3655at 4151.343 kb on + strand, within PP_3655at 4151.467 kb on + strand, within PP_3655at 4151.468 kb on - strand, within PP_3655at 4151.518 kb on - strand, within PP_3655at 4151.577 kb on + strand, within PP_3655at 4151.577 kb on + strand, within PP_3655at 4151.578 kb on - strand, within PP_3655at 4151.578 kb on - strand, within PP_3655at 4151.610 kb on + strand, within PP_3655at 4151.610 kb on + strand, within PP_3655at 4151.635 kb on + strand, within PP_3655at 4151.658 kb on + strand, within PP_3655at 4151.658 kb on + strand, within PP_3655at 4151.659 kb on - strand, within PP_3655at 4151.659 kb on - strand, within PP_3655at 4151.659 kb on - strand, within PP_3655at 4151.711 kb on - strandat 4151.736 kb on + strandat 4151.737 kb on - strandat 4151.766 kb on + strandat 4151.808 kb on + strandat 4151.958 kb on + strandat 4151.977 kb on + strandat 4152.016 kb on + strandat 4152.017 kb on - strandat 4152.039 kb on - strandat 4152.085 kb on + strandat 4152.085 kb on + strandat 4152.085 kb on + strandat 4152.085 kb on + strandat 4152.086 kb on - strandat 4152.086 kb on - strandat 4152.086 kb on - strandat 4152.086 kb on - strandat 4152.086 kb on - strandat 4152.093 kb on - strand, within PP_3656at 4152.093 kb on - strand, within PP_3656at 4152.176 kb on + strand, within PP_3656at 4152.176 kb on + strand, within PP_3656at 4152.177 kb on - strand, within PP_3656at 4152.177 kb on - strand, within PP_3656at 4152.251 kb on - strand, within PP_3656at 4152.251 kb on - strand, within PP_3656at 4152.290 kb on + strand, within PP_3656at 4152.290 kb on + strand, within PP_3656at 4152.290 kb on + strand, within PP_3656at 4152.291 kb on - strand, within PP_3656at 4152.316 kb on + strand, within PP_3656at 4152.316 kb on + strand, within PP_3656at 4152.316 kb on + strand, within PP_3656at 4152.316 kb on + strand, within PP_3656at 4152.317 kb on - strand, within PP_3656at 4152.317 kb on - strand, within PP_3656at 4152.317 kb on - strand, within PP_3656at 4152.317 kb on - strand, within PP_3656at 4152.317 kb on - strand, within PP_3656at 4152.317 kb on - strand, within PP_3656at 4152.317 kb on - strand, within PP_3656at 4152.404 kb on - strand, within PP_3656at 4152.412 kb on + strand, within PP_3656at 4152.417 kb on - strand, within PP_3656at 4152.417 kb on - strand, within PP_3656at 4152.417 kb on - strand, within PP_3656at 4152.420 kb on + strand, within PP_3656at 4152.421 kb on - strand, within PP_3656at 4152.527 kb on + strand, within PP_3656at 4152.549 kb on - strand, within PP_3656at 4152.622 kb on + strand, within PP_3656at 4152.622 kb on + strand, within PP_3656at 4152.622 kb on + strand, within PP_3656at 4152.628 kb on + strand, within PP_3656at 4152.628 kb on + strand, within PP_3656at 4152.629 kb on - strand, within PP_3656at 4152.629 kb on - strand, within PP_3656at 4152.734 kb on + strand, within PP_3656at 4152.734 kb on + strand, within PP_3656at 4152.734 kb on + strand, within PP_3656at 4152.735 kb on - strand, within PP_3656at 4152.794 kb on + strand, within PP_3656at 4152.794 kb on + strand, within PP_3656at 4152.794 kb on + strand, within PP_3656at 4152.794 kb on + strand, within PP_3656at 4152.795 kb on - strand, within PP_3656at 4152.795 kb on - strand, within PP_3656at 4152.798 kb on - strand, within PP_3656at 4152.808 kb on - strand, within PP_3656

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin (C)
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4,149,432 - -0.6
4,149,450 + +0.5
4,149,450 + +0.8
4,149,455 - -0.1
4,149,696 + PP_3654 0.32 -2.0
4,149,749 - PP_3654 0.44 +0.6
4,149,749 - PP_3654 0.44 -0.2
4,149,769 + PP_3654 0.49 +0.4
4,149,906 + +0.4
4,149,907 - PP_3654 0.79 -1.6
4,149,907 - PP_3654 0.79 +0.9
4,149,907 - PP_3654 0.79 +0.3
4,149,927 - PP_3654 0.83 +0.5
4,149,927 - PP_3654 0.83 -0.6
4,149,927 - PP_3654 0.83 +0.3
4,149,999 + +0.6
4,150,000 - -0.8
4,150,000 - +0.8
4,150,000 - +0.6
4,150,059 - +0.6
4,150,059 - +0.4
4,150,060 - +1.6
4,150,269 + +0.1
4,150,279 + +0.1
4,150,279 + +0.3
4,150,279 + -0.9
4,150,279 + +1.2
4,150,279 + +0.4
4,150,279 + -1.2
4,150,279 + +0.5
4,150,280 - -0.5
4,150,280 - +0.4
4,150,280 - -1.4
4,150,280 - +0.8
4,150,280 - -0.8
4,150,280 - -0.5
4,150,280 - +0.3
4,150,280 - -0.0
4,150,280 - -0.1
4,150,280 - +0.5
4,150,283 + +0.2
4,150,283 + +1.1
4,150,377 + -0.1
4,150,378 - +1.1
4,150,481 - -0.1
4,150,576 + PP_3655 0.13 -0.7
4,150,577 - PP_3655 0.13 +0.5
4,150,577 - PP_3655 0.13 +0.3
4,150,577 - PP_3655 0.13 +0.2
4,150,740 + PP_3655 0.24 +0.3
4,150,740 + PP_3655 0.24 -0.8
4,150,740 + PP_3655 0.24 -0.2
4,150,741 - PP_3655 0.24 +0.5
4,150,741 - PP_3655 0.24 -0.7
4,150,741 - PP_3655 0.24 +0.2
4,150,741 - PP_3655 0.24 -1.0
4,150,741 - PP_3655 0.24 +0.7
4,150,741 - PP_3655 0.24 +0.7
4,150,942 - PP_3655 0.38 +0.3
4,151,055 + PP_3655 0.46 -0.2
4,151,055 + PP_3655 0.46 -0.5
4,151,056 - PP_3655 0.47 -0.1
4,151,076 + PP_3655 0.48 +0.1
4,151,121 + PP_3655 0.51 -1.1
4,151,121 + PP_3655 0.51 +1.1
4,151,121 + PP_3655 0.51 -0.6
4,151,122 - PP_3655 0.51 -1.1
4,151,283 - PP_3655 0.63 +1.0
4,151,298 + PP_3655 0.64 +0.6
4,151,298 + PP_3655 0.64 +0.1
4,151,299 - PP_3655 0.64 -0.6
4,151,299 - PP_3655 0.64 +0.1
4,151,299 - PP_3655 0.64 -0.8
4,151,343 + PP_3655 0.67 +0.2
4,151,343 + PP_3655 0.67 -0.0
4,151,467 + PP_3655 0.76 -0.2
4,151,468 - PP_3655 0.76 +1.0
4,151,518 - PP_3655 0.79 +0.6
4,151,577 + PP_3655 0.83 +0.6
4,151,577 + PP_3655 0.83 +0.7
4,151,578 - PP_3655 0.84 +0.1
4,151,578 - PP_3655 0.84 +0.2
4,151,610 + PP_3655 0.86 +0.4
4,151,610 + PP_3655 0.86 +0.2
4,151,635 + PP_3655 0.88 -0.4
4,151,658 + PP_3655 0.89 +1.2
4,151,658 + PP_3655 0.89 -0.2
4,151,659 - PP_3655 0.89 -0.1
4,151,659 - PP_3655 0.89 -1.3
4,151,659 - PP_3655 0.89 +0.4
4,151,711 - +0.4
4,151,736 + -1.0
4,151,737 - -0.8
4,151,766 + -0.4
4,151,808 + +0.4
4,151,958 + -0.2
4,151,977 + +0.3
4,152,016 + +0.6
4,152,017 - -0.5
4,152,039 - +0.3
4,152,085 + -1.0
4,152,085 + -0.4
4,152,085 + -0.5
4,152,085 + +0.3
4,152,086 - -0.9
4,152,086 - -0.4
4,152,086 - -1.0
4,152,086 - -1.2
4,152,086 - -0.4
4,152,093 - PP_3656 0.10 +0.0
4,152,093 - PP_3656 0.10 -0.1
4,152,176 + PP_3656 0.17 +0.8
4,152,176 + PP_3656 0.17 +0.2
4,152,177 - PP_3656 0.17 +0.4
4,152,177 - PP_3656 0.17 +1.4
4,152,251 - PP_3656 0.23 +0.8
4,152,251 - PP_3656 0.23 -0.3
4,152,290 + PP_3656 0.26 +0.1
4,152,290 + PP_3656 0.26 +0.6
4,152,290 + PP_3656 0.26 +0.2
4,152,291 - PP_3656 0.26 -0.2
4,152,316 + PP_3656 0.28 -0.3
4,152,316 + PP_3656 0.28 -0.4
4,152,316 + PP_3656 0.28 +0.5
4,152,316 + PP_3656 0.28 +0.8
4,152,317 - PP_3656 0.28 +0.2
4,152,317 - PP_3656 0.28 -0.1
4,152,317 - PP_3656 0.28 +0.5
4,152,317 - PP_3656 0.28 +0.1
4,152,317 - PP_3656 0.28 -1.0
4,152,317 - PP_3656 0.28 +1.5
4,152,317 - PP_3656 0.28 +0.3
4,152,404 - PP_3656 0.35 +0.9
4,152,412 + PP_3656 0.36 -0.3
4,152,417 - PP_3656 0.36 +0.2
4,152,417 - PP_3656 0.36 +0.8
4,152,417 - PP_3656 0.36 -1.0
4,152,420 + PP_3656 0.36 -1.0
4,152,421 - PP_3656 0.36 +0.7
4,152,527 + PP_3656 0.45 -0.4
4,152,549 - PP_3656 0.47 -0.4
4,152,622 + PP_3656 0.52 -0.1
4,152,622 + PP_3656 0.52 -1.1
4,152,622 + PP_3656 0.52 -0.2
4,152,628 + PP_3656 0.53 +0.7
4,152,628 + PP_3656 0.53 +0.8
4,152,629 - PP_3656 0.53 +0.6
4,152,629 - PP_3656 0.53 -0.4
4,152,734 + PP_3656 0.61 +0.1
4,152,734 + PP_3656 0.61 +0.7
4,152,734 + PP_3656 0.61 +1.0
4,152,735 - PP_3656 0.61 +0.8
4,152,794 + PP_3656 0.66 -0.2
4,152,794 + PP_3656 0.66 +0.3
4,152,794 + PP_3656 0.66 -0.2
4,152,794 + PP_3656 0.66 +0.5
4,152,795 - PP_3656 0.66 -2.7
4,152,795 - PP_3656 0.66 +0.2
4,152,798 - PP_3656 0.66 +1.2
4,152,808 - PP_3656 0.67 -0.7

Or see this region's nucleotide sequence