Strain Fitness in Pseudomonas putida KT2440 around PP_0709

Experiment: Vanillin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0708 and PP_0709 are separated by 13 nucleotidesPP_0709 and PP_0710 are separated by 92 nucleotidesPP_0710 and PP_0711 are separated by 211 nucleotides PP_0708: PP_0708 - putative Betaine-aldehyde dehydrogenase, at 823,173 to 824,603 _0708 PP_0709: PP_0709 - Transporter, NCS1 nucleoside transporter family, at 824,617 to 826,116 _0709 PP_0710: PP_0710 - conserved protein of unknown function, at 826,209 to 826,598 _0710 PP_0711: PP_0711 - putative hydrolase, at 826,810 to 827,430 _0711 Position (kb) 824 825 826 827Strain fitness (log2 ratio) -2 -1 0 1 2at 824.047 kb on + strand, within PP_0708at 824.273 kb on - strand, within PP_0708at 824.337 kb on - strand, within PP_0708at 824.585 kb on + strandat 824.585 kb on + strandat 824.586 kb on - strandat 824.586 kb on - strandat 824.587 kb on + strandat 824.587 kb on + strandat 824.588 kb on - strandat 824.588 kb on - strandat 824.646 kb on + strandat 824.646 kb on + strandat 824.693 kb on + strandat 824.735 kb on + strandat 824.735 kb on + strandat 824.736 kb on - strandat 824.906 kb on + strand, within PP_0709at 824.907 kb on - strand, within PP_0709at 824.907 kb on - strand, within PP_0709at 824.936 kb on - strand, within PP_0709at 824.936 kb on - strand, within PP_0709at 824.958 kb on - strand, within PP_0709at 824.958 kb on - strand, within PP_0709at 824.958 kb on - strand, within PP_0709at 825.018 kb on + strand, within PP_0709at 825.018 kb on + strand, within PP_0709at 825.019 kb on - strand, within PP_0709at 825.019 kb on - strand, within PP_0709at 825.019 kb on - strand, within PP_0709at 825.044 kb on - strand, within PP_0709at 825.044 kb on - strand, within PP_0709at 825.118 kb on - strand, within PP_0709at 825.176 kb on + strand, within PP_0709at 825.176 kb on + strand, within PP_0709at 825.176 kb on + strand, within PP_0709at 825.176 kb on + strand, within PP_0709at 825.177 kb on - strand, within PP_0709at 825.246 kb on + strand, within PP_0709at 825.247 kb on - strand, within PP_0709at 825.275 kb on + strand, within PP_0709at 825.275 kb on + strand, within PP_0709at 825.275 kb on + strand, within PP_0709at 825.275 kb on + strand, within PP_0709at 825.275 kb on + strand, within PP_0709at 825.275 kb on + strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.293 kb on + strand, within PP_0709at 825.294 kb on - strand, within PP_0709at 825.294 kb on - strand, within PP_0709at 825.327 kb on + strand, within PP_0709at 825.327 kb on + strand, within PP_0709at 825.328 kb on - strand, within PP_0709at 825.419 kb on + strand, within PP_0709at 825.420 kb on - strand, within PP_0709at 825.649 kb on + strand, within PP_0709at 825.649 kb on + strand, within PP_0709at 825.650 kb on - strand, within PP_0709at 825.650 kb on - strand, within PP_0709at 825.681 kb on - strand, within PP_0709at 825.830 kb on - strand, within PP_0709at 825.830 kb on - strand, within PP_0709at 826.141 kb on + strandat 826.142 kb on - strandat 826.199 kb on + strandat 826.374 kb on + strand, within PP_0710at 826.374 kb on + strand, within PP_0710at 826.374 kb on + strand, within PP_0710at 826.374 kb on + strand, within PP_0710at 826.374 kb on + strand, within PP_0710at 826.374 kb on + strand, within PP_0710at 826.374 kb on + strand, within PP_0710at 826.375 kb on - strand, within PP_0710at 826.375 kb on - strand, within PP_0710at 826.375 kb on - strand, within PP_0710at 826.375 kb on - strand, within PP_0710at 826.375 kb on - strand, within PP_0710at 826.410 kb on - strand, within PP_0710at 826.447 kb on + strand, within PP_0710at 826.777 kb on + strandat 826.778 kb on - strandat 826.853 kb on + strandat 826.955 kb on - strand, within PP_0711

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin (C)
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824,047 + PP_0708 0.61 +0.9
824,273 - PP_0708 0.77 -1.0
824,337 - PP_0708 0.81 -0.0
824,585 + -1.0
824,585 + +0.8
824,586 - +0.8
824,586 - +2.1
824,587 + +0.3
824,587 + +1.0
824,588 - +1.6
824,588 - +0.4
824,646 + +0.1
824,646 + -0.7
824,693 + +1.3
824,735 + -0.2
824,735 + +0.7
824,736 - +0.2
824,906 + PP_0709 0.19 +0.2
824,907 - PP_0709 0.19 -0.5
824,907 - PP_0709 0.19 -0.2
824,936 - PP_0709 0.21 +0.0
824,936 - PP_0709 0.21 -0.3
824,958 - PP_0709 0.23 +0.3
824,958 - PP_0709 0.23 -1.5
824,958 - PP_0709 0.23 -0.5
825,018 + PP_0709 0.27 +0.1
825,018 + PP_0709 0.27 +0.4
825,019 - PP_0709 0.27 +1.1
825,019 - PP_0709 0.27 -0.9
825,019 - PP_0709 0.27 -0.1
825,044 - PP_0709 0.28 +1.4
825,044 - PP_0709 0.28 -1.3
825,118 - PP_0709 0.33 -2.1
825,176 + PP_0709 0.37 +0.1
825,176 + PP_0709 0.37 -1.2
825,176 + PP_0709 0.37 +0.7
825,176 + PP_0709 0.37 +0.2
825,177 - PP_0709 0.37 -0.2
825,246 + PP_0709 0.42 +0.2
825,247 - PP_0709 0.42 -0.9
825,275 + PP_0709 0.44 +0.3
825,275 + PP_0709 0.44 -0.1
825,275 + PP_0709 0.44 +1.5
825,275 + PP_0709 0.44 +0.1
825,275 + PP_0709 0.44 +0.7
825,275 + PP_0709 0.44 +0.3
825,276 - PP_0709 0.44 -0.5
825,276 - PP_0709 0.44 +0.3
825,276 - PP_0709 0.44 -0.2
825,276 - PP_0709 0.44 -1.0
825,276 - PP_0709 0.44 +0.5
825,276 - PP_0709 0.44 +0.5
825,276 - PP_0709 0.44 -0.5
825,276 - PP_0709 0.44 -0.4
825,293 + PP_0709 0.45 -0.3
825,294 - PP_0709 0.45 +0.7
825,294 - PP_0709 0.45 -0.7
825,327 + PP_0709 0.47 +0.1
825,327 + PP_0709 0.47 +0.3
825,328 - PP_0709 0.47 -0.1
825,419 + PP_0709 0.53 -0.4
825,420 - PP_0709 0.54 +0.3
825,649 + PP_0709 0.69 -0.2
825,649 + PP_0709 0.69 -1.0
825,650 - PP_0709 0.69 -0.8
825,650 - PP_0709 0.69 +0.9
825,681 - PP_0709 0.71 -0.1
825,830 - PP_0709 0.81 -0.6
825,830 - PP_0709 0.81 +0.1
826,141 + -0.1
826,142 - -1.5
826,199 + -0.9
826,374 + PP_0710 0.42 +0.2
826,374 + PP_0710 0.42 +0.1
826,374 + PP_0710 0.42 -1.0
826,374 + PP_0710 0.42 -2.3
826,374 + PP_0710 0.42 +0.3
826,374 + PP_0710 0.42 -0.7
826,374 + PP_0710 0.42 -0.5
826,375 - PP_0710 0.43 -0.2
826,375 - PP_0710 0.43 -0.6
826,375 - PP_0710 0.43 +1.3
826,375 - PP_0710 0.43 -0.3
826,375 - PP_0710 0.43 -0.2
826,410 - PP_0710 0.52 +0.1
826,447 + PP_0710 0.61 +0.3
826,777 + +0.1
826,778 - +0.3
826,853 + +0.9
826,955 - PP_0711 0.23 +0.5

Or see this region's nucleotide sequence