Experiment: Vanillin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0708 and PP_0709 are separated by 13 nucleotides PP_0709 and PP_0710 are separated by 92 nucleotides PP_0710 and PP_0711 are separated by 211 nucleotides
PP_0708: PP_0708 - putative Betaine-aldehyde dehydrogenase, at 823,173 to 824,603
_0708
PP_0709: PP_0709 - Transporter, NCS1 nucleoside transporter family, at 824,617 to 826,116
_0709
PP_0710: PP_0710 - conserved protein of unknown function, at 826,209 to 826,598
_0710
PP_0711: PP_0711 - putative hydrolase, at 826,810 to 827,430
_0711
Position (kb)
824
825
826
827 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 824.047 kb on + strand, within PP_0708 at 824.273 kb on - strand, within PP_0708 at 824.337 kb on - strand, within PP_0708 at 824.585 kb on + strand at 824.585 kb on + strand at 824.586 kb on - strand at 824.586 kb on - strand at 824.587 kb on + strand at 824.587 kb on + strand at 824.588 kb on - strand at 824.588 kb on - strand at 824.646 kb on + strand at 824.646 kb on + strand at 824.693 kb on + strand at 824.735 kb on + strand at 824.735 kb on + strand at 824.736 kb on - strand at 824.906 kb on + strand, within PP_0709 at 824.907 kb on - strand, within PP_0709 at 824.907 kb on - strand, within PP_0709 at 824.936 kb on - strand, within PP_0709 at 824.936 kb on - strand, within PP_0709 at 824.958 kb on - strand, within PP_0709 at 824.958 kb on - strand, within PP_0709 at 824.958 kb on - strand, within PP_0709 at 825.018 kb on + strand, within PP_0709 at 825.018 kb on + strand, within PP_0709 at 825.019 kb on - strand, within PP_0709 at 825.019 kb on - strand, within PP_0709 at 825.019 kb on - strand, within PP_0709 at 825.044 kb on - strand, within PP_0709 at 825.044 kb on - strand, within PP_0709 at 825.118 kb on - strand, within PP_0709 at 825.176 kb on + strand, within PP_0709 at 825.176 kb on + strand, within PP_0709 at 825.176 kb on + strand, within PP_0709 at 825.176 kb on + strand, within PP_0709 at 825.177 kb on - strand, within PP_0709 at 825.246 kb on + strand, within PP_0709 at 825.247 kb on - strand, within PP_0709 at 825.275 kb on + strand, within PP_0709 at 825.275 kb on + strand, within PP_0709 at 825.275 kb on + strand, within PP_0709 at 825.275 kb on + strand, within PP_0709 at 825.275 kb on + strand, within PP_0709 at 825.275 kb on + strand, within PP_0709 at 825.276 kb on - strand, within PP_0709 at 825.276 kb on - strand, within PP_0709 at 825.276 kb on - strand, within PP_0709 at 825.276 kb on - strand, within PP_0709 at 825.276 kb on - strand, within PP_0709 at 825.276 kb on - strand, within PP_0709 at 825.276 kb on - strand, within PP_0709 at 825.276 kb on - strand, within PP_0709 at 825.293 kb on + strand, within PP_0709 at 825.294 kb on - strand, within PP_0709 at 825.294 kb on - strand, within PP_0709 at 825.327 kb on + strand, within PP_0709 at 825.327 kb on + strand, within PP_0709 at 825.328 kb on - strand, within PP_0709 at 825.419 kb on + strand, within PP_0709 at 825.420 kb on - strand, within PP_0709 at 825.649 kb on + strand, within PP_0709 at 825.649 kb on + strand, within PP_0709 at 825.650 kb on - strand, within PP_0709 at 825.650 kb on - strand, within PP_0709 at 825.681 kb on - strand, within PP_0709 at 825.830 kb on - strand, within PP_0709 at 825.830 kb on - strand, within PP_0709 at 826.141 kb on + strand at 826.142 kb on - strand at 826.199 kb on + strand at 826.374 kb on + strand, within PP_0710 at 826.374 kb on + strand, within PP_0710 at 826.374 kb on + strand, within PP_0710 at 826.374 kb on + strand, within PP_0710 at 826.374 kb on + strand, within PP_0710 at 826.374 kb on + strand, within PP_0710 at 826.374 kb on + strand, within PP_0710 at 826.375 kb on - strand, within PP_0710 at 826.375 kb on - strand, within PP_0710 at 826.375 kb on - strand, within PP_0710 at 826.375 kb on - strand, within PP_0710 at 826.375 kb on - strand, within PP_0710 at 826.410 kb on - strand, within PP_0710 at 826.447 kb on + strand, within PP_0710 at 826.777 kb on + strand at 826.778 kb on - strand at 826.853 kb on + strand at 826.955 kb on - strand, within PP_0711
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin (C) remove 824,047 + PP_0708 0.61 +0.9 824,273 - PP_0708 0.77 -1.0 824,337 - PP_0708 0.81 -0.0 824,585 + -1.0 824,585 + +0.8 824,586 - +0.8 824,586 - +2.1 824,587 + +0.3 824,587 + +1.0 824,588 - +1.6 824,588 - +0.4 824,646 + +0.1 824,646 + -0.7 824,693 + +1.3 824,735 + -0.2 824,735 + +0.7 824,736 - +0.2 824,906 + PP_0709 0.19 +0.2 824,907 - PP_0709 0.19 -0.5 824,907 - PP_0709 0.19 -0.2 824,936 - PP_0709 0.21 +0.0 824,936 - PP_0709 0.21 -0.3 824,958 - PP_0709 0.23 +0.3 824,958 - PP_0709 0.23 -1.5 824,958 - PP_0709 0.23 -0.5 825,018 + PP_0709 0.27 +0.1 825,018 + PP_0709 0.27 +0.4 825,019 - PP_0709 0.27 +1.1 825,019 - PP_0709 0.27 -0.9 825,019 - PP_0709 0.27 -0.1 825,044 - PP_0709 0.28 +1.4 825,044 - PP_0709 0.28 -1.3 825,118 - PP_0709 0.33 -2.1 825,176 + PP_0709 0.37 +0.1 825,176 + PP_0709 0.37 -1.2 825,176 + PP_0709 0.37 +0.7 825,176 + PP_0709 0.37 +0.2 825,177 - PP_0709 0.37 -0.2 825,246 + PP_0709 0.42 +0.2 825,247 - PP_0709 0.42 -0.9 825,275 + PP_0709 0.44 +0.3 825,275 + PP_0709 0.44 -0.1 825,275 + PP_0709 0.44 +1.5 825,275 + PP_0709 0.44 +0.1 825,275 + PP_0709 0.44 +0.7 825,275 + PP_0709 0.44 +0.3 825,276 - PP_0709 0.44 -0.5 825,276 - PP_0709 0.44 +0.3 825,276 - PP_0709 0.44 -0.2 825,276 - PP_0709 0.44 -1.0 825,276 - PP_0709 0.44 +0.5 825,276 - PP_0709 0.44 +0.5 825,276 - PP_0709 0.44 -0.5 825,276 - PP_0709 0.44 -0.4 825,293 + PP_0709 0.45 -0.3 825,294 - PP_0709 0.45 +0.7 825,294 - PP_0709 0.45 -0.7 825,327 + PP_0709 0.47 +0.1 825,327 + PP_0709 0.47 +0.3 825,328 - PP_0709 0.47 -0.1 825,419 + PP_0709 0.53 -0.4 825,420 - PP_0709 0.54 +0.3 825,649 + PP_0709 0.69 -0.2 825,649 + PP_0709 0.69 -1.0 825,650 - PP_0709 0.69 -0.8 825,650 - PP_0709 0.69 +0.9 825,681 - PP_0709 0.71 -0.1 825,830 - PP_0709 0.81 -0.6 825,830 - PP_0709 0.81 +0.1 826,141 + -0.1 826,142 - -1.5 826,199 + -0.9 826,374 + PP_0710 0.42 +0.2 826,374 + PP_0710 0.42 +0.1 826,374 + PP_0710 0.42 -1.0 826,374 + PP_0710 0.42 -2.3 826,374 + PP_0710 0.42 +0.3 826,374 + PP_0710 0.42 -0.7 826,374 + PP_0710 0.42 -0.5 826,375 - PP_0710 0.43 -0.2 826,375 - PP_0710 0.43 -0.6 826,375 - PP_0710 0.43 +1.3 826,375 - PP_0710 0.43 -0.3 826,375 - PP_0710 0.43 -0.2 826,410 - PP_0710 0.52 +0.1 826,447 + PP_0710 0.61 +0.3 826,777 + +0.1 826,778 - +0.3 826,853 + +0.9 826,955 - PP_0711 0.23 +0.5
Or see this region's nucleotide sequence