Strain Fitness in Pseudomonas simiae WCS417 around PS417_02895

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02885 and PS417_02890 are separated by 262 nucleotidesPS417_02890 and PS417_02895 overlap by 4 nucleotidesPS417_02895 and PS417_02900 are separated by 38 nucleotides PS417_02885: PS417_02885 - hypothetical protein, at 659,193 to 659,588 _02885 PS417_02890: PS417_02890 - cobalt-precorrin-6X reductase, at 659,851 to 660,570 _02890 PS417_02895: PS417_02895 - precorrin-6Y C5,15-methyltransferase, at 660,567 to 661,772 _02895 PS417_02900: PS417_02900 - oxidoreductase, at 661,811 to 663,157 _02900 Position (kb) 660 661 662Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 659.629 kb on - strandat 659.651 kb on - strandat 659.651 kb on - strandat 659.651 kb on - strandat 659.743 kb on - strandat 659.743 kb on - strandat 659.743 kb on - strandat 660.494 kb on + strand, within PS417_02890at 660.494 kb on + strand, within PS417_02890at 660.494 kb on + strand, within PS417_02890at 660.498 kb on + strand, within PS417_02890at 660.498 kb on + strand, within PS417_02890at 660.498 kb on + strand, within PS417_02890at 660.499 kb on - strandat 660.499 kb on - strandat 660.517 kb on - strandat 661.334 kb on + strand, within PS417_02895at 661.334 kb on + strand, within PS417_02895at 661.532 kb on - strand, within PS417_02895at 661.676 kb on + strandat 661.750 kb on - strandat 661.750 kb on - strandat 661.772 kb on + strandat 661.772 kb on + strandat 661.773 kb on - strandat 661.777 kb on - strandat 661.777 kb on - strandat 661.777 kb on - strandat 661.777 kb on - strandat 661.777 kb on - strandat 661.834 kb on - strandat 661.834 kb on - strandat 661.892 kb on - strandat 662.027 kb on + strand, within PS417_02900at 662.651 kb on + strand, within PS417_02900

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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659,629 - +2.3
659,651 - +0.3
659,651 - -0.2
659,651 - +0.4
659,743 - +0.3
659,743 - +1.1
659,743 - -0.1
660,494 + PS417_02890 0.89 -1.3
660,494 + PS417_02890 0.89 -1.8
660,494 + PS417_02890 0.89 -0.6
660,498 + PS417_02890 0.90 -2.9
660,498 + PS417_02890 0.90 -1.3
660,498 + PS417_02890 0.90 -1.9
660,499 - -1.7
660,499 - -1.9
660,517 - -1.1
661,334 + PS417_02895 0.64 -1.7
661,334 + PS417_02895 0.64 -2.3
661,532 - PS417_02895 0.80 -0.9
661,676 + -3.7
661,750 - -2.1
661,750 - -1.1
661,772 + -1.8
661,772 + -2.7
661,773 - +0.4
661,777 - +0.3
661,777 - -0.5
661,777 - -0.2
661,777 - -1.2
661,777 - -0.7
661,834 - -0.7
661,834 - -2.1
661,892 - -1.0
662,027 + PS417_02900 0.16 +1.9
662,651 + PS417_02900 0.62 -0.1

Or see this region's nucleotide sequence