Strain Fitness in Pseudomonas simiae WCS417 around PS417_20895

Experiment: Adenosine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_20890 and PS417_20895 are separated by 123 nucleotidesPS417_20895 and PS417_20900 are separated by 12 nucleotides PS417_20890: PS417_20890 - Xanthine dehydrogenase (EC 1.17.1.4) (from data), at 4,540,656 to 4,543,055 _20890 PS417_20895: PS417_20895 - molybdenum cofactor sulfurylase, at 4,543,179 to 4,544,018 _20895 PS417_20900: PS417_20900 - guanine deaminase, at 4,544,031 to 4,545,335 _20900 Position (kb) 4543 4544 4545Strain fitness (log2 ratio) -1 0 1 2at 4542.345 kb on + strand, within PS417_20890at 4542.474 kb on + strand, within PS417_20890at 4542.492 kb on + strand, within PS417_20890at 4542.495 kb on + strand, within PS417_20890at 4542.495 kb on + strand, within PS417_20890at 4542.495 kb on + strand, within PS417_20890at 4542.528 kb on + strand, within PS417_20890at 4542.528 kb on + strand, within PS417_20890at 4542.529 kb on - strand, within PS417_20890at 4542.529 kb on - strand, within PS417_20890at 4542.531 kb on + strand, within PS417_20890at 4542.588 kb on + strand, within PS417_20890at 4542.756 kb on + strand, within PS417_20890at 4542.756 kb on + strand, within PS417_20890at 4542.757 kb on - strand, within PS417_20890at 4542.757 kb on - strand, within PS417_20890at 4543.344 kb on + strand, within PS417_20895at 4543.345 kb on - strand, within PS417_20895at 4543.345 kb on - strand, within PS417_20895at 4543.604 kb on + strand, within PS417_20895at 4543.604 kb on + strandat 4543.604 kb on + strand, within PS417_20895at 4543.604 kb on + strand, within PS417_20895at 4543.604 kb on + strand, within PS417_20895at 4543.604 kb on + strand, within PS417_20895at 4543.604 kb on + strand, within PS417_20895at 4543.605 kb on - strand, within PS417_20895at 4543.605 kb on - strand, within PS417_20895at 4543.605 kb on - strand, within PS417_20895at 4543.605 kb on - strand, within PS417_20895at 4543.605 kb on - strand, within PS417_20895at 4543.605 kb on - strand, within PS417_20895at 4543.605 kb on - strand, within PS417_20895at 4543.605 kb on - strand, within PS417_20895at 4543.605 kb on - strand, within PS417_20895at 4543.605 kb on - strand, within PS417_20895at 4543.605 kb on - strand, within PS417_20895at 4543.605 kb on - strand, within PS417_20895at 4543.605 kb on - strand, within PS417_20895at 4543.605 kb on - strand, within PS417_20895at 4543.606 kb on + strand, within PS417_20895at 4543.606 kb on + strand, within PS417_20895at 4543.607 kb on - strand, within PS417_20895at 4543.607 kb on - strand, within PS417_20895at 4543.677 kb on + strand, within PS417_20895at 4543.932 kb on + strand, within PS417_20895at 4543.932 kb on + strand, within PS417_20895at 4543.932 kb on + strand, within PS417_20895at 4543.932 kb on + strand, within PS417_20895at 4543.933 kb on - strand, within PS417_20895at 4543.935 kb on - strandat 4544.112 kb on + strandat 4544.113 kb on - strandat 4544.113 kb on - strandat 4544.113 kb on - strandat 4544.113 kb on - strandat 4544.118 kb on + strandat 4544.118 kb on + strandat 4544.118 kb on + strandat 4544.118 kb on + strandat 4544.119 kb on - strandat 4544.119 kb on - strandat 4544.224 kb on - strand, within PS417_20900at 4544.331 kb on + strand, within PS417_20900at 4544.331 kb on + strand, within PS417_20900at 4544.331 kb on + strand, within PS417_20900at 4544.331 kb on + strand, within PS417_20900at 4544.331 kb on + strand, within PS417_20900at 4544.332 kb on - strand, within PS417_20900at 4544.332 kb on - strand, within PS417_20900at 4544.332 kb on - strand, within PS417_20900at 4544.547 kb on + strand, within PS417_20900at 4544.548 kb on - strand, within PS417_20900at 4544.715 kb on + strand, within PS417_20900at 4544.716 kb on - strand, within PS417_20900at 4544.716 kb on - strand, within PS417_20900at 4544.802 kb on + strand, within PS417_20900at 4544.802 kb on + strand, within PS417_20900at 4544.802 kb on + strand, within PS417_20900at 4544.803 kb on - strand, within PS417_20900at 4544.803 kb on - strand, within PS417_20900at 4544.803 kb on - strandat 4544.803 kb on - strand, within PS417_20900at 4544.803 kb on - strand, within PS417_20900at 4544.803 kb on - strand, within PS417_20900at 4544.803 kb on - strand, within PS417_20900

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
remove
4,542,345 + PS417_20890 0.70 +0.9
4,542,474 + PS417_20890 0.76 +0.6
4,542,492 + PS417_20890 0.77 +0.8
4,542,495 + PS417_20890 0.77 +1.2
4,542,495 + PS417_20890 0.77 +1.5
4,542,495 + PS417_20890 0.77 +0.8
4,542,528 + PS417_20890 0.78 +0.8
4,542,528 + PS417_20890 0.78 +0.9
4,542,529 - PS417_20890 0.78 +0.9
4,542,529 - PS417_20890 0.78 +0.2
4,542,531 + PS417_20890 0.78 +0.0
4,542,588 + PS417_20890 0.81 +1.1
4,542,756 + PS417_20890 0.88 +0.7
4,542,756 + PS417_20890 0.88 +0.2
4,542,757 - PS417_20890 0.88 +1.2
4,542,757 - PS417_20890 0.88 +1.4
4,543,344 + PS417_20895 0.20 -0.6
4,543,345 - PS417_20895 0.20 +0.3
4,543,345 - PS417_20895 0.20 +0.8
4,543,604 + PS417_20895 0.51 +1.1
4,543,604 + +1.3
4,543,604 + PS417_20895 0.51 +0.8
4,543,604 + PS417_20895 0.51 +1.4
4,543,604 + PS417_20895 0.51 -0.1
4,543,604 + PS417_20895 0.51 +0.2
4,543,604 + PS417_20895 0.51 +0.7
4,543,605 - PS417_20895 0.51 -0.1
4,543,605 - PS417_20895 0.51 +0.6
4,543,605 - PS417_20895 0.51 +0.8
4,543,605 - PS417_20895 0.51 +0.8
4,543,605 - PS417_20895 0.51 +0.7
4,543,605 - PS417_20895 0.51 +1.1
4,543,605 - PS417_20895 0.51 +0.8
4,543,605 - PS417_20895 0.51 +0.7
4,543,605 - PS417_20895 0.51 +0.2
4,543,605 - PS417_20895 0.51 +1.2
4,543,605 - PS417_20895 0.51 +0.4
4,543,605 - PS417_20895 0.51 +1.0
4,543,605 - PS417_20895 0.51 +1.1
4,543,605 - PS417_20895 0.51 +0.5
4,543,606 + PS417_20895 0.51 +0.4
4,543,606 + PS417_20895 0.51 +0.2
4,543,607 - PS417_20895 0.51 +1.0
4,543,607 - PS417_20895 0.51 +0.8
4,543,677 + PS417_20895 0.59 +0.9
4,543,932 + PS417_20895 0.90 +1.3
4,543,932 + PS417_20895 0.90 +0.5
4,543,932 + PS417_20895 0.90 +0.3
4,543,932 + PS417_20895 0.90 +1.1
4,543,933 - PS417_20895 0.90 +0.9
4,543,935 - -0.1
4,544,112 + +1.2
4,544,113 - +1.9
4,544,113 - -0.5
4,544,113 - -0.2
4,544,113 - +0.4
4,544,118 + +0.0
4,544,118 + +0.4
4,544,118 + +1.4
4,544,118 + -0.1
4,544,119 - -1.4
4,544,119 - +0.3
4,544,224 - PS417_20900 0.15 +0.0
4,544,331 + PS417_20900 0.23 +0.1
4,544,331 + PS417_20900 0.23 +0.4
4,544,331 + PS417_20900 0.23 +0.0
4,544,331 + PS417_20900 0.23 +0.7
4,544,331 + PS417_20900 0.23 -0.8
4,544,332 - PS417_20900 0.23 +1.9
4,544,332 - PS417_20900 0.23 +0.0
4,544,332 - PS417_20900 0.23 +0.2
4,544,547 + PS417_20900 0.40 +0.0
4,544,548 - PS417_20900 0.40 +0.1
4,544,715 + PS417_20900 0.52 -0.3
4,544,716 - PS417_20900 0.52 +0.1
4,544,716 - PS417_20900 0.52 -0.0
4,544,802 + PS417_20900 0.59 +0.2
4,544,802 + PS417_20900 0.59 +0.0
4,544,802 + PS417_20900 0.59 +0.0
4,544,803 - PS417_20900 0.59 +1.9
4,544,803 - PS417_20900 0.59 +0.5
4,544,803 - -0.5
4,544,803 - PS417_20900 0.59 +0.3
4,544,803 - PS417_20900 0.59 -0.6
4,544,803 - PS417_20900 0.59 -1.5
4,544,803 - PS417_20900 0.59 +1.3

Or see this region's nucleotide sequence