Strain Fitness in Pseudomonas simiae WCS417 around PS417_11505

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11500 and PS417_11505 are separated by 14 nucleotidesPS417_11505 and PS417_11510 are separated by 155 nucleotides PS417_11500: PS417_11500 - hypothetical protein, at 2,473,119 to 2,474,147 _11500 PS417_11505: PS417_11505 - ion channel protein Tsx, at 2,474,162 to 2,475,109 _11505 PS417_11510: PS417_11510 - AraC family transcriptional regulator, at 2,475,265 to 2,476,203 _11510 Position (kb) 2474 2475 2476Strain fitness (log2 ratio) -1 0 1 2 3 4at 2473.363 kb on + strand, within PS417_11500at 2473.363 kb on + strand, within PS417_11500at 2473.363 kb on + strand, within PS417_11500at 2473.364 kb on - strand, within PS417_11500at 2473.364 kb on - strand, within PS417_11500at 2473.364 kb on - strand, within PS417_11500at 2473.834 kb on + strand, within PS417_11500at 2474.149 kb on + strandat 2474.150 kb on - strandat 2474.188 kb on - strandat 2474.278 kb on - strand, within PS417_11505at 2474.412 kb on + strand, within PS417_11505at 2474.457 kb on + strand, within PS417_11505at 2474.457 kb on + strand, within PS417_11505at 2474.458 kb on - strand, within PS417_11505at 2474.634 kb on + strand, within PS417_11505at 2474.655 kb on + strand, within PS417_11505at 2474.714 kb on - strandat 2474.770 kb on + strand, within PS417_11505at 2474.808 kb on + strand, within PS417_11505at 2474.845 kb on - strand, within PS417_11505at 2474.859 kb on + strand, within PS417_11505at 2474.859 kb on + strandat 2474.890 kb on + strand, within PS417_11505at 2474.906 kb on + strand, within PS417_11505at 2474.943 kb on + strand, within PS417_11505at 2474.943 kb on + strand, within PS417_11505at 2474.943 kb on + strand, within PS417_11505at 2476.013 kb on + strand, within PS417_11510

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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2,473,363 + PS417_11500 0.24 +0.1
2,473,363 + PS417_11500 0.24 -0.3
2,473,363 + PS417_11500 0.24 +0.8
2,473,364 - PS417_11500 0.24 +0.2
2,473,364 - PS417_11500 0.24 +0.1
2,473,364 - PS417_11500 0.24 +0.2
2,473,834 + PS417_11500 0.69 +0.6
2,474,149 + +0.8
2,474,150 - +1.0
2,474,188 - +4.1
2,474,278 - PS417_11505 0.12 +3.5
2,474,412 + PS417_11505 0.26 +4.0
2,474,457 + PS417_11505 0.31 +3.5
2,474,457 + PS417_11505 0.31 +3.7
2,474,458 - PS417_11505 0.31 +3.8
2,474,634 + PS417_11505 0.50 +4.4
2,474,655 + PS417_11505 0.52 +3.7
2,474,714 - +3.6
2,474,770 + PS417_11505 0.64 +3.5
2,474,808 + PS417_11505 0.68 +3.9
2,474,845 - PS417_11505 0.72 +2.7
2,474,859 + PS417_11505 0.74 +3.8
2,474,859 + +3.8
2,474,890 + PS417_11505 0.77 +4.0
2,474,906 + PS417_11505 0.78 +4.3
2,474,943 + PS417_11505 0.82 +3.5
2,474,943 + PS417_11505 0.82 +3.7
2,474,943 + PS417_11505 0.82 +3.7
2,476,013 + PS417_11510 0.80 -0.1

Or see this region's nucleotide sequence