Strain Fitness in Pseudomonas simiae WCS417 around PS417_08035

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08030 and PS417_08035 are separated by 122 nucleotidesPS417_08035 and PS417_08040 are separated by 122 nucleotides PS417_08030: PS417_08030 - transcriptional regulator, at 1,756,561 to 1,757,484 _08030 PS417_08035: PS417_08035 - adenine transporter (MFS superfamily) (from data), at 1,757,607 to 1,758,797 _08035 PS417_08040: PS417_08040 - hypothetical protein, at 1,758,920 to 1,759,753 _08040 Position (kb) 1757 1758 1759Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1756.775 kb on - strand, within PS417_08030at 1756.870 kb on + strand, within PS417_08030at 1757.096 kb on + strand, within PS417_08030at 1757.096 kb on + strand, within PS417_08030at 1757.097 kb on - strand, within PS417_08030at 1757.380 kb on - strand, within PS417_08030at 1757.382 kb on - strand, within PS417_08030at 1757.382 kb on - strand, within PS417_08030at 1757.382 kb on - strand, within PS417_08030at 1757.679 kb on + strandat 1757.679 kb on + strandat 1757.679 kb on + strandat 1757.679 kb on + strandat 1757.679 kb on + strandat 1757.679 kb on + strandat 1757.679 kb on + strandat 1757.680 kb on - strandat 1757.680 kb on - strandat 1757.680 kb on - strandat 1757.680 kb on - strandat 1757.680 kb on - strandat 1757.680 kb on - strandat 1757.680 kb on - strandat 1757.750 kb on + strand, within PS417_08035at 1758.140 kb on - strand, within PS417_08035at 1758.223 kb on + strand, within PS417_08035at 1758.223 kb on + strand, within PS417_08035at 1758.224 kb on - strand, within PS417_08035at 1758.224 kb on - strand, within PS417_08035at 1758.224 kb on - strand, within PS417_08035at 1758.342 kb on + strand, within PS417_08035at 1758.343 kb on - strand, within PS417_08035at 1758.343 kb on - strand, within PS417_08035at 1758.346 kb on + strand, within PS417_08035at 1758.346 kb on + strand, within PS417_08035at 1758.347 kb on - strand, within PS417_08035at 1758.347 kb on - strand, within PS417_08035at 1758.347 kb on - strand, within PS417_08035at 1758.378 kb on + strand, within PS417_08035at 1758.379 kb on - strand, within PS417_08035at 1758.379 kb on - strand, within PS417_08035at 1758.444 kb on + strand, within PS417_08035at 1758.641 kb on - strand, within PS417_08035at 1758.641 kb on - strand, within PS417_08035at 1758.836 kb on + strandat 1758.836 kb on + strandat 1758.836 kb on + strandat 1758.837 kb on - strandat 1758.853 kb on - strandat 1758.922 kb on - strandat 1759.023 kb on + strand, within PS417_08040at 1759.023 kb on + strand, within PS417_08040at 1759.023 kb on + strand, within PS417_08040at 1759.024 kb on - strand, within PS417_08040at 1759.138 kb on - strand, within PS417_08040at 1759.144 kb on + strand, within PS417_08040at 1759.213 kb on - strand, within PS417_08040at 1759.213 kb on - strand, within PS417_08040at 1759.213 kb on - strand, within PS417_08040at 1759.213 kb on - strand, within PS417_08040at 1759.213 kb on - strand, within PS417_08040at 1759.213 kb on - strand, within PS417_08040at 1759.279 kb on - strand, within PS417_08040at 1759.279 kb on - strand, within PS417_08040at 1759.281 kb on + strand, within PS417_08040at 1759.282 kb on - strand, within PS417_08040at 1759.282 kb on - strand, within PS417_08040at 1759.282 kb on - strand, within PS417_08040at 1759.282 kb on - strand, within PS417_08040at 1759.282 kb on - strand, within PS417_08040at 1759.408 kb on - strand, within PS417_08040at 1759.459 kb on - strand, within PS417_08040at 1759.459 kb on - strand, within PS417_08040at 1759.483 kb on - strand, within PS417_08040at 1759.570 kb on - strand, within PS417_08040at 1759.599 kb on + strand, within PS417_08040at 1759.600 kb on - strand, within PS417_08040at 1759.717 kb on + strandat 1759.739 kb on + strandat 1759.740 kb on - strandat 1759.757 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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1,756,775 - PS417_08030 0.23 -1.7
1,756,870 + PS417_08030 0.33 -0.0
1,757,096 + PS417_08030 0.58 +0.2
1,757,096 + PS417_08030 0.58 -0.2
1,757,097 - PS417_08030 0.58 -0.1
1,757,380 - PS417_08030 0.89 -0.9
1,757,382 - PS417_08030 0.89 -0.3
1,757,382 - PS417_08030 0.89 -0.9
1,757,382 - PS417_08030 0.89 -1.3
1,757,679 + +3.2
1,757,679 + -1.7
1,757,679 + -1.5
1,757,679 + +0.0
1,757,679 + -0.4
1,757,679 + -0.6
1,757,679 + -2.4
1,757,680 - -1.7
1,757,680 - -2.3
1,757,680 - -1.3
1,757,680 - -1.8
1,757,680 - -1.7
1,757,680 - -0.9
1,757,680 - -1.1
1,757,750 + PS417_08035 0.12 -2.4
1,758,140 - PS417_08035 0.45 -0.8
1,758,223 + PS417_08035 0.52 +0.0
1,758,223 + PS417_08035 0.52 -1.2
1,758,224 - PS417_08035 0.52 -1.4
1,758,224 - PS417_08035 0.52 -1.7
1,758,224 - PS417_08035 0.52 -0.1
1,758,342 + PS417_08035 0.62 -1.3
1,758,343 - PS417_08035 0.62 -1.7
1,758,343 - PS417_08035 0.62 -0.6
1,758,346 + PS417_08035 0.62 -1.5
1,758,346 + PS417_08035 0.62 -1.6
1,758,347 - PS417_08035 0.62 -1.2
1,758,347 - PS417_08035 0.62 -0.5
1,758,347 - PS417_08035 0.62 -1.2
1,758,378 + PS417_08035 0.65 -1.4
1,758,379 - PS417_08035 0.65 -0.5
1,758,379 - PS417_08035 0.65 -0.9
1,758,444 + PS417_08035 0.70 -0.6
1,758,641 - PS417_08035 0.87 -1.5
1,758,641 - PS417_08035 0.87 +0.2
1,758,836 + -0.4
1,758,836 + -2.2
1,758,836 + +0.9
1,758,837 - -0.2
1,758,853 - +0.4
1,758,922 - -0.3
1,759,023 + PS417_08040 0.12 +0.6
1,759,023 + PS417_08040 0.12 -0.6
1,759,023 + PS417_08040 0.12 -0.2
1,759,024 - PS417_08040 0.12 -0.3
1,759,138 - PS417_08040 0.26 +0.1
1,759,144 + PS417_08040 0.27 -0.5
1,759,213 - PS417_08040 0.35 +0.0
1,759,213 - PS417_08040 0.35 +0.4
1,759,213 - PS417_08040 0.35 -1.1
1,759,213 - PS417_08040 0.35 -0.2
1,759,213 - PS417_08040 0.35 +0.6
1,759,213 - PS417_08040 0.35 -0.2
1,759,279 - PS417_08040 0.43 -0.2
1,759,279 - PS417_08040 0.43 -0.4
1,759,281 + PS417_08040 0.43 -2.1
1,759,282 - PS417_08040 0.43 -0.4
1,759,282 - PS417_08040 0.43 -1.7
1,759,282 - PS417_08040 0.43 -0.3
1,759,282 - PS417_08040 0.43 +0.0
1,759,282 - PS417_08040 0.43 -0.2
1,759,408 - PS417_08040 0.59 +0.1
1,759,459 - PS417_08040 0.65 +0.3
1,759,459 - PS417_08040 0.65 -1.9
1,759,483 - PS417_08040 0.68 +0.4
1,759,570 - PS417_08040 0.78 +0.0
1,759,599 + PS417_08040 0.81 -1.4
1,759,600 - PS417_08040 0.82 +0.4
1,759,717 + -0.6
1,759,739 + -0.1
1,759,740 - -1.1
1,759,757 + +0.3

Or see this region's nucleotide sequence