Strain Fitness in Pseudomonas putida KT2440 around PP_4149

Experiment: Levulinic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4148 and PP_4149 are separated by 1 nucleotidesPP_4149 and PP_4150 are separated by 1 nucleotides PP_4148: PP_4148 - putative inner membrane ABC transporter permease protein, at 4,687,025 to 4,688,098 _4148 PP_4149: PP_4149 - putative inner membrane ABC transporter permease protein, at 4,688,100 to 4,689,119 _4149 PP_4150: PP_4150 - microcin C transporter - ATP binding subunit, at 4,689,121 to 4,690,725 _4150 Position (kb) 4688 4689 4690Strain fitness (log2 ratio) -1 0 1at 4687.274 kb on + strand, within PP_4148at 4687.274 kb on + strand, within PP_4148at 4687.274 kb on + strand, within PP_4148at 4687.275 kb on - strand, within PP_4148at 4687.275 kb on - strand, within PP_4148at 4687.326 kb on - strand, within PP_4148at 4687.326 kb on - strandat 4687.439 kb on + strand, within PP_4148at 4687.439 kb on + strand, within PP_4148at 4687.439 kb on + strand, within PP_4148at 4687.439 kb on + strand, within PP_4148at 4687.439 kb on + strand, within PP_4148at 4687.439 kb on + strand, within PP_4148at 4687.440 kb on - strand, within PP_4148at 4687.440 kb on - strand, within PP_4148at 4687.530 kb on - strand, within PP_4148at 4687.589 kb on + strand, within PP_4148at 4687.667 kb on + strand, within PP_4148at 4687.667 kb on + strand, within PP_4148at 4687.668 kb on - strand, within PP_4148at 4687.668 kb on - strand, within PP_4148at 4687.772 kb on + strand, within PP_4148at 4687.772 kb on + strand, within PP_4148at 4687.773 kb on - strand, within PP_4148at 4687.773 kb on - strand, within PP_4148at 4688.051 kb on + strandat 4688.052 kb on - strandat 4688.052 kb on - strandat 4688.052 kb on - strandat 4688.052 kb on - strandat 4688.052 kb on - strandat 4688.263 kb on - strand, within PP_4149at 4688.328 kb on + strand, within PP_4149at 4688.329 kb on - strand, within PP_4149at 4688.340 kb on + strand, within PP_4149at 4688.340 kb on + strand, within PP_4149at 4688.341 kb on - strand, within PP_4149at 4688.341 kb on - strand, within PP_4149at 4688.341 kb on - strand, within PP_4149at 4688.418 kb on + strand, within PP_4149at 4688.418 kb on + strand, within PP_4149at 4688.418 kb on + strand, within PP_4149at 4688.418 kb on + strand, within PP_4149at 4688.419 kb on - strand, within PP_4149at 4688.419 kb on - strandat 4688.419 kb on - strand, within PP_4149at 4688.419 kb on - strand, within PP_4149at 4688.512 kb on - strand, within PP_4149at 4688.512 kb on - strand, within PP_4149at 4688.602 kb on - strand, within PP_4149at 4688.602 kb on - strand, within PP_4149at 4688.602 kb on - strand, within PP_4149at 4688.667 kb on + strand, within PP_4149at 4688.667 kb on + strand, within PP_4149at 4688.667 kb on + strand, within PP_4149at 4688.668 kb on - strand, within PP_4149at 4688.800 kb on - strand, within PP_4149at 4688.848 kb on - strand, within PP_4149at 4689.738 kb on + strand, within PP_4150at 4689.877 kb on + strand, within PP_4150at 4689.877 kb on + strand, within PP_4150at 4689.877 kb on + strand, within PP_4150at 4689.877 kb on + strand, within PP_4150at 4689.878 kb on - strand, within PP_4150

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Per-strain Table

Position Strand Gene LocusTag Fraction Levulinic Acid (C)
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4,687,274 + PP_4148 0.23 +0.8
4,687,274 + PP_4148 0.23 +0.3
4,687,274 + PP_4148 0.23 +1.2
4,687,275 - PP_4148 0.23 +0.6
4,687,275 - PP_4148 0.23 +0.6
4,687,326 - PP_4148 0.28 +0.1
4,687,326 - -0.7
4,687,439 + PP_4148 0.39 +0.7
4,687,439 + PP_4148 0.39 -0.3
4,687,439 + PP_4148 0.39 -0.3
4,687,439 + PP_4148 0.39 -0.6
4,687,439 + PP_4148 0.39 +0.6
4,687,439 + PP_4148 0.39 -0.5
4,687,440 - PP_4148 0.39 -0.2
4,687,440 - PP_4148 0.39 -0.1
4,687,530 - PP_4148 0.47 +0.7
4,687,589 + PP_4148 0.53 +0.4
4,687,667 + PP_4148 0.60 -0.1
4,687,667 + PP_4148 0.60 -0.7
4,687,668 - PP_4148 0.60 -0.5
4,687,668 - PP_4148 0.60 -0.2
4,687,772 + PP_4148 0.70 +0.2
4,687,772 + PP_4148 0.70 +1.0
4,687,773 - PP_4148 0.70 +1.5
4,687,773 - PP_4148 0.70 -0.2
4,688,051 + +0.4
4,688,052 - -0.6
4,688,052 - +0.6
4,688,052 - -0.1
4,688,052 - +0.5
4,688,052 - +0.1
4,688,263 - PP_4149 0.16 +0.3
4,688,328 + PP_4149 0.22 -0.4
4,688,329 - PP_4149 0.22 -0.1
4,688,340 + PP_4149 0.24 -0.1
4,688,340 + PP_4149 0.24 +0.4
4,688,341 - PP_4149 0.24 -0.3
4,688,341 - PP_4149 0.24 +0.7
4,688,341 - PP_4149 0.24 -0.3
4,688,418 + PP_4149 0.31 +0.5
4,688,418 + PP_4149 0.31 +0.1
4,688,418 + PP_4149 0.31 +0.1
4,688,418 + PP_4149 0.31 +1.1
4,688,419 - PP_4149 0.31 +0.2
4,688,419 - +0.9
4,688,419 - PP_4149 0.31 -0.1
4,688,419 - PP_4149 0.31 -0.7
4,688,512 - PP_4149 0.40 +0.3
4,688,512 - PP_4149 0.40 -0.1
4,688,602 - PP_4149 0.49 -0.7
4,688,602 - PP_4149 0.49 -0.4
4,688,602 - PP_4149 0.49 +0.7
4,688,667 + PP_4149 0.56 -0.3
4,688,667 + PP_4149 0.56 +0.7
4,688,667 + PP_4149 0.56 +1.0
4,688,668 - PP_4149 0.56 -0.5
4,688,800 - PP_4149 0.69 +0.4
4,688,848 - PP_4149 0.73 +0.1
4,689,738 + PP_4150 0.38 -0.7
4,689,877 + PP_4150 0.47 +0.5
4,689,877 + PP_4150 0.47 -0.6
4,689,877 + PP_4150 0.47 -0.1
4,689,877 + PP_4150 0.47 +1.2
4,689,878 - PP_4150 0.47 -0.1

Or see this region's nucleotide sequence