Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS21195

Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS21185 and RPSI07_RS21190 are separated by 40 nucleotidesRPSI07_RS21190 and RPSI07_RS21195 are separated by 38 nucleotidesRPSI07_RS21195 and RPSI07_RS21200 overlap by 8 nucleotidesRPSI07_RS21200 and RPSI07_RS21205 are separated by 18 nucleotides RPSI07_RS21185: RPSI07_RS21185 - lipopolysaccharide heptosyltransferase II, at 2,918,260 to 2,919,285 _RS21185 RPSI07_RS21190: RPSI07_RS21190 - hypothetical protein, at 2,919,326 to 2,919,766 _RS21190 RPSI07_RS21195: RPSI07_RS21195 - alpha/beta hydrolase, at 2,919,805 to 2,920,920 _RS21195 RPSI07_RS21200: RPSI07_RS21200 - DUF2946 domain-containing protein, at 2,920,913 to 2,921,500 _RS21200 RPSI07_RS21205: RPSI07_RS21205 - peptidase M48, at 2,921,519 to 2,923,207 _RS21205 Position (kb) 2919 2920 2921Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2919.154 kb on - strand, within RPSI07_RS21185at 2919.154 kb on - strandat 2919.284 kb on - strandat 2919.284 kb on - strandat 2919.638 kb on + strand, within RPSI07_RS21190at 2919.638 kb on + strand, within RPSI07_RS21190at 2919.639 kb on - strand, within RPSI07_RS21190at 2919.639 kb on - strand, within RPSI07_RS21190at 2919.653 kb on + strand, within RPSI07_RS21190at 2919.654 kb on - strand, within RPSI07_RS21190at 2919.654 kb on - strand, within RPSI07_RS21190at 2919.967 kb on + strand, within RPSI07_RS21195at 2920.096 kb on + strand, within RPSI07_RS21195at 2920.139 kb on + strand, within RPSI07_RS21195at 2920.198 kb on + strand, within RPSI07_RS21195at 2920.198 kb on + strand, within RPSI07_RS21195at 2920.198 kb on + strand, within RPSI07_RS21195at 2920.198 kb on + strand, within RPSI07_RS21195at 2920.199 kb on - strand, within RPSI07_RS21195at 2920.199 kb on - strand, within RPSI07_RS21195at 2920.199 kb on - strand, within RPSI07_RS21195at 2920.246 kb on + strand, within RPSI07_RS21195at 2920.247 kb on - strand, within RPSI07_RS21195at 2920.247 kb on - strand, within RPSI07_RS21195at 2920.325 kb on - strand, within RPSI07_RS21195at 2920.439 kb on - strand, within RPSI07_RS21195at 2920.439 kb on - strand, within RPSI07_RS21195at 2920.507 kb on + strand, within RPSI07_RS21195at 2920.508 kb on - strand, within RPSI07_RS21195at 2920.595 kb on - strand, within RPSI07_RS21195at 2920.595 kb on - strand, within RPSI07_RS21195at 2920.601 kb on - strand, within RPSI07_RS21195at 2920.601 kb on - strand, within RPSI07_RS21195at 2921.018 kb on + strand, within RPSI07_RS21200at 2921.019 kb on - strand, within RPSI07_RS21200at 2921.090 kb on + strand, within RPSI07_RS21200at 2921.091 kb on - strand, within RPSI07_RS21200at 2921.091 kb on - strand, within RPSI07_RS21200at 2921.159 kb on + strand, within RPSI07_RS21200at 2921.608 kb on - strandat 2921.683 kb on - strandat 2921.733 kb on + strand, within RPSI07_RS21205at 2921.734 kb on - strand, within RPSI07_RS21205at 2921.800 kb on - strand, within RPSI07_RS21205at 2921.847 kb on + strand, within RPSI07_RS21205at 2921.847 kb on + strand, within RPSI07_RS21205at 2921.847 kb on + strand, within RPSI07_RS21205at 2921.847 kb on + strand, within RPSI07_RS21205at 2921.847 kb on + strand, within RPSI07_RS21205at 2921.848 kb on - strand, within RPSI07_RS21205at 2921.877 kb on + strand, within RPSI07_RS21205

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
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2,919,154 - RPSI07_RS21185 0.87 -0.4
2,919,154 - -2.8
2,919,284 - -0.9
2,919,284 - +0.6
2,919,638 + RPSI07_RS21190 0.71 -1.9
2,919,638 + RPSI07_RS21190 0.71 +0.0
2,919,639 - RPSI07_RS21190 0.71 +0.3
2,919,639 - RPSI07_RS21190 0.71 +1.0
2,919,653 + RPSI07_RS21190 0.74 -1.3
2,919,654 - RPSI07_RS21190 0.74 -0.3
2,919,654 - RPSI07_RS21190 0.74 +0.6
2,919,967 + RPSI07_RS21195 0.15 -0.4
2,920,096 + RPSI07_RS21195 0.26 -0.0
2,920,139 + RPSI07_RS21195 0.30 -0.4
2,920,198 + RPSI07_RS21195 0.35 -0.8
2,920,198 + RPSI07_RS21195 0.35 +1.6
2,920,198 + RPSI07_RS21195 0.35 -1.5
2,920,198 + RPSI07_RS21195 0.35 +0.6
2,920,199 - RPSI07_RS21195 0.35 +0.6
2,920,199 - RPSI07_RS21195 0.35 +1.2
2,920,199 - RPSI07_RS21195 0.35 +0.9
2,920,246 + RPSI07_RS21195 0.40 +0.6
2,920,247 - RPSI07_RS21195 0.40 -0.2
2,920,247 - RPSI07_RS21195 0.40 +1.0
2,920,325 - RPSI07_RS21195 0.47 -1.0
2,920,439 - RPSI07_RS21195 0.57 +0.3
2,920,439 - RPSI07_RS21195 0.57 -0.2
2,920,507 + RPSI07_RS21195 0.63 +0.7
2,920,508 - RPSI07_RS21195 0.63 -0.0
2,920,595 - RPSI07_RS21195 0.71 +0.6
2,920,595 - RPSI07_RS21195 0.71 -1.4
2,920,601 - RPSI07_RS21195 0.71 -1.0
2,920,601 - RPSI07_RS21195 0.71 +0.6
2,921,018 + RPSI07_RS21200 0.18 -0.0
2,921,019 - RPSI07_RS21200 0.18 +2.6
2,921,090 + RPSI07_RS21200 0.30 +2.2
2,921,091 - RPSI07_RS21200 0.30 -0.4
2,921,091 - RPSI07_RS21200 0.30 +1.6
2,921,159 + RPSI07_RS21200 0.42 +0.2
2,921,608 - +0.6
2,921,683 - -0.2
2,921,733 + RPSI07_RS21205 0.13 +0.6
2,921,734 - RPSI07_RS21205 0.13 +0.2
2,921,800 - RPSI07_RS21205 0.17 -0.6
2,921,847 + RPSI07_RS21205 0.19 +1.3
2,921,847 + RPSI07_RS21205 0.19 -0.2
2,921,847 + RPSI07_RS21205 0.19 +0.3
2,921,847 + RPSI07_RS21205 0.19 -0.1
2,921,847 + RPSI07_RS21205 0.19 +2.0
2,921,848 - RPSI07_RS21205 0.19 +0.2
2,921,877 + RPSI07_RS21205 0.21 +1.9

Or see this region's nucleotide sequence