Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS02895 and RPSI07_RS02900 are separated by 58 nucleotides RPSI07_RS02900 and RPSI07_RS02905 overlap by 4 nucleotides RPSI07_RS02905 and RPSI07_RS02910 are separated by 55 nucleotides
RPSI07_RS02895: RPSI07_RS02895 - rhs element vgr-like protein, at 799,449 to 801,947
_RS02895
RPSI07_RS02900: RPSI07_RS02900 - type VI secretion system protein ImpK, at 802,006 to 802,797
_RS02900
RPSI07_RS02905: RPSI07_RS02905 - type VI secretion system baseplate subunit TssK, at 802,794 to 804,140
_RS02905
RPSI07_RS02910: RPSI07_RS02910 - type VI secretion system lipoprotein TssJ, at 804,196 to 804,876
_RS02910
Position (kb) 802
803
804
805 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 802.064 kb on + strand at 802.064 kb on + strand at 802.064 kb on + strand at 802.116 kb on + strand, within RPSI07_RS02900 at 802.116 kb on + strand, within RPSI07_RS02900 at 802.116 kb on + strand, within RPSI07_RS02900 at 802.116 kb on + strand, within RPSI07_RS02900 at 802.116 kb on + strand, within RPSI07_RS02900 at 802.117 kb on - strand, within RPSI07_RS02900 at 802.118 kb on + strand, within RPSI07_RS02900 at 802.118 kb on + strand, within RPSI07_RS02900 at 802.119 kb on - strand, within RPSI07_RS02900 at 802.119 kb on - strand, within RPSI07_RS02900 at 802.119 kb on - strand, within RPSI07_RS02900 at 802.119 kb on - strand, within RPSI07_RS02900 at 802.119 kb on - strand, within RPSI07_RS02900 at 802.280 kb on + strand, within RPSI07_RS02900 at 802.280 kb on + strand, within RPSI07_RS02900 at 802.281 kb on - strand, within RPSI07_RS02900 at 802.281 kb on - strand, within RPSI07_RS02900 at 802.310 kb on + strand, within RPSI07_RS02900 at 802.310 kb on + strand, within RPSI07_RS02900 at 802.310 kb on + strand, within RPSI07_RS02900 at 802.310 kb on + strand, within RPSI07_RS02900 at 802.310 kb on + strand, within RPSI07_RS02900 at 802.310 kb on + strand, within RPSI07_RS02900 at 802.310 kb on + strand, within RPSI07_RS02900 at 802.310 kb on + strand, within RPSI07_RS02900 at 802.310 kb on + strand, within RPSI07_RS02900 at 802.310 kb on + strand, within RPSI07_RS02900 at 802.311 kb on - strand, within RPSI07_RS02900 at 802.311 kb on - strand, within RPSI07_RS02900 at 802.311 kb on - strand, within RPSI07_RS02900 at 802.311 kb on - strand, within RPSI07_RS02900 at 802.311 kb on - strand, within RPSI07_RS02900 at 802.311 kb on - strand, within RPSI07_RS02900 at 802.311 kb on - strand, within RPSI07_RS02900 at 802.311 kb on - strand, within RPSI07_RS02900 at 802.311 kb on - strand, within RPSI07_RS02900 at 802.311 kb on - strand, within RPSI07_RS02900 at 802.311 kb on - strand, within RPSI07_RS02900 at 802.348 kb on + strand, within RPSI07_RS02900 at 802.348 kb on + strand, within RPSI07_RS02900 at 802.348 kb on + strand, within RPSI07_RS02900 at 802.349 kb on - strand, within RPSI07_RS02900 at 802.349 kb on - strand, within RPSI07_RS02900 at 802.349 kb on - strand, within RPSI07_RS02900 at 802.529 kb on + strand, within RPSI07_RS02900 at 802.529 kb on + strand, within RPSI07_RS02900 at 802.530 kb on - strand, within RPSI07_RS02900 at 802.530 kb on - strand, within RPSI07_RS02900 at 802.682 kb on + strand, within RPSI07_RS02900 at 802.682 kb on + strand, within RPSI07_RS02900 at 802.682 kb on + strand, within RPSI07_RS02900 at 802.682 kb on + strand, within RPSI07_RS02900 at 802.683 kb on - strand, within RPSI07_RS02900 at 802.683 kb on - strand, within RPSI07_RS02900 at 802.789 kb on - strand at 802.849 kb on + strand at 802.849 kb on + strand at 802.849 kb on + strand at 802.849 kb on + strand at 802.849 kb on + strand at 802.849 kb on + strand at 802.849 kb on + strand at 802.849 kb on + strand at 802.849 kb on + strand at 802.849 kb on + strand at 802.849 kb on + strand at 802.849 kb on + strand at 802.850 kb on - strand at 802.850 kb on - strand at 802.850 kb on - strand at 802.850 kb on - strand at 802.850 kb on - strand at 802.850 kb on - strand at 802.885 kb on + strand at 802.885 kb on + strand at 802.886 kb on - strand at 802.886 kb on - strand at 802.886 kb on - strand at 802.886 kb on - strand at 802.915 kb on + strand at 802.915 kb on + strand at 802.915 kb on + strand at 802.916 kb on - strand at 802.916 kb on - strand at 802.916 kb on - strand at 802.917 kb on - strand at 802.961 kb on + strand, within RPSI07_RS02905 at 802.963 kb on + strand, within RPSI07_RS02905 at 802.963 kb on + strand, within RPSI07_RS02905 at 802.963 kb on + strand, within RPSI07_RS02905 at 802.964 kb on - strand, within RPSI07_RS02905 at 802.964 kb on - strand, within RPSI07_RS02905 at 802.964 kb on - strand, within RPSI07_RS02905 at 802.964 kb on - strand, within RPSI07_RS02905 at 802.964 kb on - strand, within RPSI07_RS02905 at 802.964 kb on - strand, within RPSI07_RS02905 at 803.092 kb on + strand, within RPSI07_RS02905 at 803.092 kb on + strand, within RPSI07_RS02905 at 803.092 kb on + strand at 803.093 kb on - strand, within RPSI07_RS02905 at 803.093 kb on - strand, within RPSI07_RS02905 at 803.179 kb on + strand, within RPSI07_RS02905 at 803.179 kb on + strand, within RPSI07_RS02905 at 803.180 kb on - strand, within RPSI07_RS02905 at 803.180 kb on - strand, within RPSI07_RS02905 at 803.263 kb on + strand, within RPSI07_RS02905 at 803.263 kb on + strand, within RPSI07_RS02905 at 803.263 kb on + strand, within RPSI07_RS02905 at 803.263 kb on + strand, within RPSI07_RS02905 at 803.263 kb on + strand, within RPSI07_RS02905 at 803.264 kb on - strand, within RPSI07_RS02905 at 803.264 kb on - strand, within RPSI07_RS02905 at 803.264 kb on - strand, within RPSI07_RS02905 at 803.287 kb on + strand, within RPSI07_RS02905 at 803.287 kb on + strand, within RPSI07_RS02905 at 803.287 kb on + strand, within RPSI07_RS02905 at 803.287 kb on + strand, within RPSI07_RS02905 at 803.287 kb on + strand, within RPSI07_RS02905 at 803.287 kb on + strand, within RPSI07_RS02905 at 803.287 kb on + strand, within RPSI07_RS02905 at 803.288 kb on - strand, within RPSI07_RS02905 at 803.288 kb on - strand, within RPSI07_RS02905 at 803.288 kb on - strand, within RPSI07_RS02905 at 803.288 kb on - strand, within RPSI07_RS02905 at 803.288 kb on - strand, within RPSI07_RS02905 at 803.371 kb on + strand, within RPSI07_RS02905 at 803.371 kb on + strand, within RPSI07_RS02905 at 803.371 kb on + strand, within RPSI07_RS02905 at 803.371 kb on + strand, within RPSI07_RS02905 at 803.372 kb on - strand, within RPSI07_RS02905 at 803.372 kb on - strand, within RPSI07_RS02905 at 803.372 kb on - strand, within RPSI07_RS02905 at 803.372 kb on - strand, within RPSI07_RS02905 at 803.372 kb on - strand, within RPSI07_RS02905 at 803.372 kb on - strand, within RPSI07_RS02905 at 803.484 kb on + strand, within RPSI07_RS02905 at 803.485 kb on + strand, within RPSI07_RS02905 at 803.485 kb on + strand, within RPSI07_RS02905 at 803.485 kb on + strand, within RPSI07_RS02905 at 803.485 kb on + strand, within RPSI07_RS02905 at 803.486 kb on - strand, within RPSI07_RS02905 at 803.486 kb on - strand, within RPSI07_RS02905 at 803.486 kb on - strand, within RPSI07_RS02905 at 803.486 kb on - strand, within RPSI07_RS02905 at 803.486 kb on - strand, within RPSI07_RS02905 at 803.486 kb on - strand, within RPSI07_RS02905 at 803.539 kb on + strand, within RPSI07_RS02905 at 803.540 kb on - strand, within RPSI07_RS02905 at 803.540 kb on - strand, within RPSI07_RS02905 at 803.540 kb on - strand, within RPSI07_RS02905 at 803.540 kb on - strand, within RPSI07_RS02905 at 803.698 kb on + strand, within RPSI07_RS02905 at 803.698 kb on + strand, within RPSI07_RS02905 at 803.698 kb on + strand, within RPSI07_RS02905 at 803.699 kb on - strand, within RPSI07_RS02905 at 803.699 kb on - strand, within RPSI07_RS02905 at 803.797 kb on + strand, within RPSI07_RS02905 at 803.797 kb on + strand, within RPSI07_RS02905 at 803.797 kb on + strand, within RPSI07_RS02905 at 803.798 kb on - strand, within RPSI07_RS02905 at 803.798 kb on - strand, within RPSI07_RS02905 at 803.917 kb on + strand, within RPSI07_RS02905 at 803.917 kb on + strand, within RPSI07_RS02905 at 803.917 kb on + strand, within RPSI07_RS02905 at 803.918 kb on - strand, within RPSI07_RS02905 at 803.918 kb on - strand, within RPSI07_RS02905 at 804.020 kb on - strand at 804.064 kb on + strand at 804.064 kb on + strand at 804.065 kb on - strand at 804.065 kb on - strand at 804.065 kb on - strand at 804.133 kb on + strand at 804.133 kb on + strand at 804.133 kb on + strand at 804.133 kb on + strand at 804.134 kb on - strand at 804.134 kb on - strand at 804.134 kb on - strand at 804.134 kb on - strand at 804.167 kb on + strand at 804.168 kb on - strand at 804.168 kb on - strand at 804.168 kb on - strand at 804.342 kb on + strand, within RPSI07_RS02910 at 804.403 kb on - strand, within RPSI07_RS02910 at 804.403 kb on - strand, within RPSI07_RS02910 at 804.438 kb on - strand, within RPSI07_RS02910 at 804.519 kb on + strand, within RPSI07_RS02910 at 804.519 kb on + strand, within RPSI07_RS02910 at 804.530 kb on + strand, within RPSI07_RS02910 at 804.569 kb on + strand, within RPSI07_RS02910 at 804.569 kb on + strand, within RPSI07_RS02910 at 804.569 kb on + strand, within RPSI07_RS02910 at 804.569 kb on + strand, within RPSI07_RS02910 at 804.569 kb on + strand, within RPSI07_RS02910 at 804.569 kb on + strand, within RPSI07_RS02910 at 804.569 kb on + strand, within RPSI07_RS02910 at 804.570 kb on - strand, within RPSI07_RS02910 at 804.570 kb on - strand, within RPSI07_RS02910 at 804.570 kb on - strand, within RPSI07_RS02910 at 804.570 kb on - strand, within RPSI07_RS02910 at 804.570 kb on - strand, within RPSI07_RS02910 at 804.570 kb on - strand, within RPSI07_RS02910 at 804.570 kb on - strand, within RPSI07_RS02910 at 804.571 kb on + strand, within RPSI07_RS02910 at 804.572 kb on - strand, within RPSI07_RS02910 at 804.572 kb on - strand, within RPSI07_RS02910 at 804.572 kb on - strand, within RPSI07_RS02910 at 804.885 kb on + strand at 804.893 kb on - strand at 804.893 kb on - strand at 804.896 kb on + strand at 804.897 kb on - strand at 805.050 kb on + strand at 805.053 kb on + strand at 805.078 kb on + strand at 805.078 kb on + strand at 805.079 kb on - strand at 805.079 kb on - strand at 805.081 kb on - strand at 805.081 kb on - strand at 805.081 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days remove 802,064 + -0.8 802,064 + -0.2 802,064 + +3.0 802,116 + RPSI07_RS02900 0.14 +1.1 802,116 + RPSI07_RS02900 0.14 +0.6 802,116 + RPSI07_RS02900 0.14 +0.6 802,116 + RPSI07_RS02900 0.14 +1.2 802,116 + RPSI07_RS02900 0.14 -0.7 802,117 - RPSI07_RS02900 0.14 +2.2 802,118 + RPSI07_RS02900 0.14 -0.5 802,118 + RPSI07_RS02900 0.14 -1.2 802,119 - RPSI07_RS02900 0.14 -1.0 802,119 - RPSI07_RS02900 0.14 -0.7 802,119 - RPSI07_RS02900 0.14 -1.7 802,119 - RPSI07_RS02900 0.14 +0.4 802,119 - RPSI07_RS02900 0.14 -1.3 802,280 + RPSI07_RS02900 0.35 -1.2 802,280 + RPSI07_RS02900 0.35 +0.5 802,281 - RPSI07_RS02900 0.35 -0.5 802,281 - RPSI07_RS02900 0.35 +0.4 802,310 + RPSI07_RS02900 0.38 +0.0 802,310 + RPSI07_RS02900 0.38 -0.5 802,310 + RPSI07_RS02900 0.38 +0.1 802,310 + RPSI07_RS02900 0.38 +0.9 802,310 + RPSI07_RS02900 0.38 -2.1 802,310 + RPSI07_RS02900 0.38 +0.6 802,310 + RPSI07_RS02900 0.38 +1.5 802,310 + RPSI07_RS02900 0.38 +0.3 802,310 + RPSI07_RS02900 0.38 +0.6 802,310 + RPSI07_RS02900 0.38 +0.6 802,311 - RPSI07_RS02900 0.39 -1.0 802,311 - RPSI07_RS02900 0.39 -1.2 802,311 - RPSI07_RS02900 0.39 -0.7 802,311 - RPSI07_RS02900 0.39 -0.1 802,311 - RPSI07_RS02900 0.39 +0.3 802,311 - RPSI07_RS02900 0.39 -0.7 802,311 - RPSI07_RS02900 0.39 +2.2 802,311 - RPSI07_RS02900 0.39 +0.9 802,311 - RPSI07_RS02900 0.39 -0.0 802,311 - RPSI07_RS02900 0.39 -0.2 802,311 - RPSI07_RS02900 0.39 +2.6 802,348 + RPSI07_RS02900 0.43 -1.2 802,348 + RPSI07_RS02900 0.43 +1.4 802,348 + RPSI07_RS02900 0.43 -0.1 802,349 - RPSI07_RS02900 0.43 +3.6 802,349 - RPSI07_RS02900 0.43 -1.6 802,349 - RPSI07_RS02900 0.43 -0.2 802,529 + RPSI07_RS02900 0.66 -0.1 802,529 + RPSI07_RS02900 0.66 -0.6 802,530 - RPSI07_RS02900 0.66 -1.2 802,530 - RPSI07_RS02900 0.66 +1.9 802,682 + RPSI07_RS02900 0.85 +0.1 802,682 + RPSI07_RS02900 0.85 -0.1 802,682 + RPSI07_RS02900 0.85 +1.2 802,682 + RPSI07_RS02900 0.85 +0.8 802,683 - RPSI07_RS02900 0.85 +0.8 802,683 - RPSI07_RS02900 0.85 -1.7 802,789 - -0.9 802,849 + -0.5 802,849 + +0.6 802,849 + +0.6 802,849 + -0.7 802,849 + +0.3 802,849 + -0.6 802,849 + -0.7 802,849 + -0.8 802,849 + +1.8 802,849 + +2.0 802,849 + -0.6 802,849 + -1.8 802,850 - -0.4 802,850 - -0.4 802,850 - +0.2 802,850 - -0.2 802,850 - -1.2 802,850 - +0.6 802,885 + -0.4 802,885 + +0.4 802,886 - +0.6 802,886 - +0.6 802,886 - -0.7 802,886 - -0.3 802,915 + -0.4 802,915 + -0.7 802,915 + -0.2 802,916 - -0.2 802,916 - -0.7 802,916 - -0.7 802,917 - +0.4 802,961 + RPSI07_RS02905 0.12 -1.0 802,963 + RPSI07_RS02905 0.13 -1.0 802,963 + RPSI07_RS02905 0.13 +0.7 802,963 + RPSI07_RS02905 0.13 -0.8 802,964 - RPSI07_RS02905 0.13 -0.0 802,964 - RPSI07_RS02905 0.13 -0.5 802,964 - RPSI07_RS02905 0.13 +0.2 802,964 - RPSI07_RS02905 0.13 -0.3 802,964 - RPSI07_RS02905 0.13 -1.7 802,964 - RPSI07_RS02905 0.13 +0.6 803,092 + RPSI07_RS02905 0.22 -1.5 803,092 + RPSI07_RS02905 0.22 -0.3 803,092 + -3.4 803,093 - RPSI07_RS02905 0.22 -0.1 803,093 - RPSI07_RS02905 0.22 +0.7 803,179 + RPSI07_RS02905 0.29 +0.2 803,179 + RPSI07_RS02905 0.29 -2.5 803,180 - RPSI07_RS02905 0.29 -1.3 803,180 - RPSI07_RS02905 0.29 -0.0 803,263 + RPSI07_RS02905 0.35 -0.1 803,263 + RPSI07_RS02905 0.35 -2.1 803,263 + RPSI07_RS02905 0.35 -1.1 803,263 + RPSI07_RS02905 0.35 -2.9 803,263 + RPSI07_RS02905 0.35 +0.4 803,264 - RPSI07_RS02905 0.35 +1.1 803,264 - RPSI07_RS02905 0.35 -2.7 803,264 - RPSI07_RS02905 0.35 -0.7 803,287 + RPSI07_RS02905 0.37 -1.4 803,287 + RPSI07_RS02905 0.37 -0.4 803,287 + RPSI07_RS02905 0.37 -1.5 803,287 + RPSI07_RS02905 0.37 -2.2 803,287 + RPSI07_RS02905 0.37 -0.7 803,287 + RPSI07_RS02905 0.37 +0.1 803,287 + RPSI07_RS02905 0.37 -0.3 803,288 - RPSI07_RS02905 0.37 -2.3 803,288 - RPSI07_RS02905 0.37 -1.0 803,288 - RPSI07_RS02905 0.37 -0.3 803,288 - RPSI07_RS02905 0.37 +1.6 803,288 - RPSI07_RS02905 0.37 -0.0 803,371 + RPSI07_RS02905 0.43 +1.0 803,371 + RPSI07_RS02905 0.43 +0.3 803,371 + RPSI07_RS02905 0.43 -0.0 803,371 + RPSI07_RS02905 0.43 -0.4 803,372 - RPSI07_RS02905 0.43 +0.6 803,372 - RPSI07_RS02905 0.43 +0.3 803,372 - RPSI07_RS02905 0.43 -0.6 803,372 - RPSI07_RS02905 0.43 +1.8 803,372 - RPSI07_RS02905 0.43 -2.2 803,372 - RPSI07_RS02905 0.43 -0.4 803,484 + RPSI07_RS02905 0.51 +0.2 803,485 + RPSI07_RS02905 0.51 +0.1 803,485 + RPSI07_RS02905 0.51 -1.0 803,485 + RPSI07_RS02905 0.51 -0.8 803,485 + RPSI07_RS02905 0.51 -1.0 803,486 - RPSI07_RS02905 0.51 -0.1 803,486 - RPSI07_RS02905 0.51 +0.8 803,486 - RPSI07_RS02905 0.51 +0.6 803,486 - RPSI07_RS02905 0.51 +1.0 803,486 - RPSI07_RS02905 0.51 -1.6 803,486 - RPSI07_RS02905 0.51 +0.1 803,539 + RPSI07_RS02905 0.55 -1.4 803,540 - RPSI07_RS02905 0.55 -0.9 803,540 - RPSI07_RS02905 0.55 -0.2 803,540 - RPSI07_RS02905 0.55 +3.5 803,540 - RPSI07_RS02905 0.55 -0.9 803,698 + RPSI07_RS02905 0.67 -0.8 803,698 + RPSI07_RS02905 0.67 +2.0 803,698 + RPSI07_RS02905 0.67 +0.3 803,699 - RPSI07_RS02905 0.67 -0.7 803,699 - RPSI07_RS02905 0.67 -3.4 803,797 + RPSI07_RS02905 0.74 -1.1 803,797 + RPSI07_RS02905 0.74 +0.5 803,797 + RPSI07_RS02905 0.74 +0.6 803,798 - RPSI07_RS02905 0.75 +0.2 803,798 - RPSI07_RS02905 0.75 -3.1 803,917 + RPSI07_RS02905 0.83 -0.9 803,917 + RPSI07_RS02905 0.83 +0.6 803,917 + RPSI07_RS02905 0.83 -1.3 803,918 - RPSI07_RS02905 0.83 -0.2 803,918 - RPSI07_RS02905 0.83 -1.4 804,020 - -1.3 804,064 + -1.4 804,064 + +2.2 804,065 - +1.1 804,065 - -1.2 804,065 - +0.3 804,133 + +0.3 804,133 + -0.3 804,133 + -1.7 804,133 + +1.6 804,134 - +0.2 804,134 - -1.9 804,134 - -0.4 804,134 - +0.6 804,167 + +0.8 804,168 - +0.4 804,168 - -0.7 804,168 - +0.8 804,342 + RPSI07_RS02910 0.21 -0.4 804,403 - RPSI07_RS02910 0.30 -0.6 804,403 - RPSI07_RS02910 0.30 +0.5 804,438 - RPSI07_RS02910 0.36 +0.4 804,519 + RPSI07_RS02910 0.47 -0.7 804,519 + RPSI07_RS02910 0.47 -1.4 804,530 + RPSI07_RS02910 0.49 -1.5 804,569 + RPSI07_RS02910 0.55 -1.0 804,569 + RPSI07_RS02910 0.55 -1.3 804,569 + RPSI07_RS02910 0.55 +0.2 804,569 + RPSI07_RS02910 0.55 -0.3 804,569 + RPSI07_RS02910 0.55 -1.2 804,569 + RPSI07_RS02910 0.55 -0.4 804,569 + RPSI07_RS02910 0.55 -2.8 804,570 - RPSI07_RS02910 0.55 -0.2 804,570 - RPSI07_RS02910 0.55 +0.2 804,570 - RPSI07_RS02910 0.55 -0.0 804,570 - RPSI07_RS02910 0.55 -0.5 804,570 - RPSI07_RS02910 0.55 +0.2 804,570 - RPSI07_RS02910 0.55 +1.6 804,570 - RPSI07_RS02910 0.55 -1.0 804,571 + RPSI07_RS02910 0.55 +0.9 804,572 - RPSI07_RS02910 0.55 -1.0 804,572 - RPSI07_RS02910 0.55 -0.7 804,572 - RPSI07_RS02910 0.55 +0.2 804,885 + -0.1 804,893 - +0.0 804,893 - -2.4 804,896 + -0.4 804,897 - +1.5 805,050 + -1.9 805,053 + -0.6 805,078 + +0.0 805,078 + +0.6 805,079 - -2.5 805,079 - +0.6 805,081 - -0.7 805,081 - +0.1 805,081 - +0.4
Or see this region's nucleotide sequence