Strain Fitness in Pseudomonas simiae WCS417 around PS417_26195

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_26190 and PS417_26195 are separated by 22 nucleotidesPS417_26195 and PS417_26200 are separated by 251 nucleotides PS417_26190: PS417_26190 - sarcosine oxidase subunit beta, at 5,659,387 to 5,660,637 _26190 PS417_26195: PS417_26195 - serine hydroxymethyltransferase, at 5,660,660 to 5,661,913 _26195 PS417_26200: PS417_26200 - conjugal transfer protein TraX, at 5,662,165 to 5,662,893 _26200 Position (kb) 5660 5661 5662Strain fitness (log2 ratio) -2 -1 0 1 2at 5659.737 kb on - strand, within PS417_26190at 5659.790 kb on + strand, within PS417_26190at 5659.791 kb on - strand, within PS417_26190at 5660.313 kb on - strand, within PS417_26190at 5660.360 kb on + strand, within PS417_26190at 5660.387 kb on + strand, within PS417_26190at 5660.387 kb on + strand, within PS417_26190at 5660.489 kb on + strand, within PS417_26190at 5660.628 kb on - strandat 5661.055 kb on - strand, within PS417_26195at 5661.416 kb on - strand, within PS417_26195at 5661.597 kb on + strand, within PS417_26195at 5661.598 kb on - strand, within PS417_26195at 5661.598 kb on - strand, within PS417_26195at 5661.598 kb on - strand, within PS417_26195at 5661.720 kb on + strand, within PS417_26195at 5661.751 kb on - strand, within PS417_26195at 5661.802 kb on - strandat 5661.883 kb on - strandat 5661.936 kb on - strandat 5661.936 kb on - strandat 5661.990 kb on - strandat 5662.113 kb on + strandat 5662.114 kb on - strandat 5662.224 kb on - strandat 5662.344 kb on + strand, within PS417_26200at 5662.345 kb on - strand, within PS417_26200at 5662.349 kb on + strand, within PS417_26200at 5662.404 kb on - strand, within PS417_26200at 5662.447 kb on + strand, within PS417_26200at 5662.447 kb on + strand, within PS417_26200at 5662.447 kb on + strand, within PS417_26200at 5662.448 kb on - strand, within PS417_26200at 5662.448 kb on - strand, within PS417_26200at 5662.448 kb on - strand, within PS417_26200at 5662.517 kb on - strand, within PS417_26200at 5662.612 kb on - strand, within PS417_26200at 5662.667 kb on + strand, within PS417_26200at 5662.763 kb on + strand, within PS417_26200at 5662.763 kb on + strand, within PS417_26200at 5662.763 kb on + strand, within PS417_26200at 5662.764 kb on - strand, within PS417_26200at 5662.791 kb on - strand, within PS417_26200at 5662.894 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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5,659,737 - PS417_26190 0.28 +0.2
5,659,790 + PS417_26190 0.32 +0.3
5,659,791 - PS417_26190 0.32 -0.4
5,660,313 - PS417_26190 0.74 -0.9
5,660,360 + PS417_26190 0.78 +0.3
5,660,387 + PS417_26190 0.80 +0.6
5,660,387 + PS417_26190 0.80 +0.7
5,660,489 + PS417_26190 0.88 -0.8
5,660,628 - -0.5
5,661,055 - PS417_26195 0.31 +0.3
5,661,416 - PS417_26195 0.60 -0.3
5,661,597 + PS417_26195 0.75 +0.1
5,661,598 - PS417_26195 0.75 -0.3
5,661,598 - PS417_26195 0.75 -0.1
5,661,598 - PS417_26195 0.75 -1.1
5,661,720 + PS417_26195 0.85 -2.2
5,661,751 - PS417_26195 0.87 +2.3
5,661,802 - +0.6
5,661,883 - -0.9
5,661,936 - +1.6
5,661,936 - +1.7
5,661,990 - +1.5
5,662,113 + -0.0
5,662,114 - +0.2
5,662,224 - +0.7
5,662,344 + PS417_26200 0.25 +0.6
5,662,345 - PS417_26200 0.25 +0.7
5,662,349 + PS417_26200 0.25 +0.4
5,662,404 - PS417_26200 0.33 -0.1
5,662,447 + PS417_26200 0.39 +0.2
5,662,447 + PS417_26200 0.39 +0.3
5,662,447 + PS417_26200 0.39 +1.0
5,662,448 - PS417_26200 0.39 -0.0
5,662,448 - PS417_26200 0.39 +0.5
5,662,448 - PS417_26200 0.39 +0.6
5,662,517 - PS417_26200 0.48 -0.1
5,662,612 - PS417_26200 0.61 +1.3
5,662,667 + PS417_26200 0.69 +1.1
5,662,763 + PS417_26200 0.82 -0.6
5,662,763 + PS417_26200 0.82 +0.4
5,662,763 + PS417_26200 0.82 +0.0
5,662,764 - PS417_26200 0.82 +2.1
5,662,791 - PS417_26200 0.86 +0.3
5,662,894 - -0.2

Or see this region's nucleotide sequence