Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26190 and PS417_26195 are separated by 22 nucleotides PS417_26195 and PS417_26200 are separated by 251 nucleotides
PS417_26190: PS417_26190 - sarcosine oxidase subunit beta, at 5,659,387 to 5,660,637
_26190
PS417_26195: PS417_26195 - serine hydroxymethyltransferase, at 5,660,660 to 5,661,913
_26195
PS417_26200: PS417_26200 - conjugal transfer protein TraX, at 5,662,165 to 5,662,893
_26200
Position (kb)
5660
5661
5662 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5659.737 kb on - strand, within PS417_26190 at 5659.790 kb on + strand, within PS417_26190 at 5659.791 kb on - strand, within PS417_26190 at 5660.313 kb on - strand, within PS417_26190 at 5660.360 kb on + strand, within PS417_26190 at 5660.387 kb on + strand, within PS417_26190 at 5660.387 kb on + strand, within PS417_26190 at 5660.489 kb on + strand, within PS417_26190 at 5660.628 kb on - strand at 5661.055 kb on - strand, within PS417_26195 at 5661.416 kb on - strand, within PS417_26195 at 5661.597 kb on + strand, within PS417_26195 at 5661.598 kb on - strand, within PS417_26195 at 5661.598 kb on - strand, within PS417_26195 at 5661.598 kb on - strand, within PS417_26195 at 5661.720 kb on + strand, within PS417_26195 at 5661.751 kb on - strand, within PS417_26195 at 5661.802 kb on - strand at 5661.883 kb on - strand at 5661.936 kb on - strand at 5661.936 kb on - strand at 5661.990 kb on - strand at 5662.113 kb on + strand at 5662.114 kb on - strand at 5662.224 kb on - strand at 5662.344 kb on + strand, within PS417_26200 at 5662.345 kb on - strand, within PS417_26200 at 5662.349 kb on + strand, within PS417_26200 at 5662.404 kb on - strand, within PS417_26200 at 5662.447 kb on + strand, within PS417_26200 at 5662.447 kb on + strand, within PS417_26200 at 5662.447 kb on + strand, within PS417_26200 at 5662.448 kb on - strand, within PS417_26200 at 5662.448 kb on - strand, within PS417_26200 at 5662.448 kb on - strand, within PS417_26200 at 5662.517 kb on - strand, within PS417_26200 at 5662.612 kb on - strand, within PS417_26200 at 5662.667 kb on + strand, within PS417_26200 at 5662.763 kb on + strand, within PS417_26200 at 5662.763 kb on + strand, within PS417_26200 at 5662.763 kb on + strand, within PS417_26200 at 5662.764 kb on - strand, within PS417_26200 at 5662.791 kb on - strand, within PS417_26200 at 5662.894 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 5,659,737 - PS417_26190 0.28 +0.2 5,659,790 + PS417_26190 0.32 +0.3 5,659,791 - PS417_26190 0.32 -0.4 5,660,313 - PS417_26190 0.74 -0.9 5,660,360 + PS417_26190 0.78 +0.3 5,660,387 + PS417_26190 0.80 +0.6 5,660,387 + PS417_26190 0.80 +0.7 5,660,489 + PS417_26190 0.88 -0.8 5,660,628 - -0.5 5,661,055 - PS417_26195 0.31 +0.3 5,661,416 - PS417_26195 0.60 -0.3 5,661,597 + PS417_26195 0.75 +0.1 5,661,598 - PS417_26195 0.75 -0.3 5,661,598 - PS417_26195 0.75 -0.1 5,661,598 - PS417_26195 0.75 -1.1 5,661,720 + PS417_26195 0.85 -2.2 5,661,751 - PS417_26195 0.87 +2.3 5,661,802 - +0.6 5,661,883 - -0.9 5,661,936 - +1.6 5,661,936 - +1.7 5,661,990 - +1.5 5,662,113 + -0.0 5,662,114 - +0.2 5,662,224 - +0.7 5,662,344 + PS417_26200 0.25 +0.6 5,662,345 - PS417_26200 0.25 +0.7 5,662,349 + PS417_26200 0.25 +0.4 5,662,404 - PS417_26200 0.33 -0.1 5,662,447 + PS417_26200 0.39 +0.2 5,662,447 + PS417_26200 0.39 +0.3 5,662,447 + PS417_26200 0.39 +1.0 5,662,448 - PS417_26200 0.39 -0.0 5,662,448 - PS417_26200 0.39 +0.5 5,662,448 - PS417_26200 0.39 +0.6 5,662,517 - PS417_26200 0.48 -0.1 5,662,612 - PS417_26200 0.61 +1.3 5,662,667 + PS417_26200 0.69 +1.1 5,662,763 + PS417_26200 0.82 -0.6 5,662,763 + PS417_26200 0.82 +0.4 5,662,763 + PS417_26200 0.82 +0.0 5,662,764 - PS417_26200 0.82 +2.1 5,662,791 - PS417_26200 0.86 +0.3 5,662,894 - -0.2
Or see this region's nucleotide sequence