Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25725 and PS417_25730 are separated by 70 nucleotides PS417_25730 and PS417_25735 overlap by 4 nucleotides PS417_25735 and PS417_25740 are separated by 84 nucleotides
PS417_25725: PS417_25725 - anthranilate synthase component I, at 5,553,238 to 5,554,719
_25725
PS417_25730: PS417_25730 - phosphoglycolate phosphatase, at 5,554,790 to 5,555,608
_25730
PS417_25735: PS417_25735 - ribulose-phosphate 3-epimerase, at 5,555,605 to 5,556,279
_25735
PS417_25740: PS417_25740 - alcohol dehydrogenase, at 5,556,364 to 5,557,512
_25740
Position (kb) 5554
5555
5556 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 5553.893 kb on + strand, within PS417_25725 at 5553.893 kb on + strand, within PS417_25725 at 5553.893 kb on + strand, within PS417_25725 at 5553.894 kb on - strand, within PS417_25725 at 5553.894 kb on - strand, within PS417_25725 at 5553.894 kb on - strand, within PS417_25725 at 5553.899 kb on + strand, within PS417_25725 at 5553.899 kb on + strand, within PS417_25725 at 5553.899 kb on + strand, within PS417_25725 at 5553.899 kb on + strand, within PS417_25725 at 5553.899 kb on + strand, within PS417_25725 at 5553.900 kb on - strand, within PS417_25725 at 5553.900 kb on - strand, within PS417_25725 at 5554.011 kb on + strand, within PS417_25725 at 5554.011 kb on + strand, within PS417_25725 at 5554.011 kb on + strand, within PS417_25725 at 5554.013 kb on + strand, within PS417_25725 at 5554.013 kb on + strand, within PS417_25725 at 5554.014 kb on - strand, within PS417_25725 at 5554.014 kb on - strand, within PS417_25725 at 5554.014 kb on - strand, within PS417_25725 at 5554.014 kb on - strand, within PS417_25725 at 5554.043 kb on + strand, within PS417_25725 at 5554.044 kb on - strand, within PS417_25725 at 5554.044 kb on - strand, within PS417_25725 at 5554.057 kb on - strand, within PS417_25725 at 5554.243 kb on + strand, within PS417_25725 at 5554.355 kb on + strand, within PS417_25725 at 5554.355 kb on + strand, within PS417_25725 at 5554.356 kb on - strand, within PS417_25725 at 5554.409 kb on + strand, within PS417_25725 at 5554.409 kb on + strand, within PS417_25725 at 5554.410 kb on - strand at 5554.508 kb on - strand, within PS417_25725 at 5554.597 kb on - strand at 5554.680 kb on - strand at 5554.723 kb on - strand at 5554.744 kb on + strand at 5554.755 kb on + strand at 5554.901 kb on + strand, within PS417_25730 at 5554.902 kb on - strand, within PS417_25730 at 5554.998 kb on + strand, within PS417_25730 at 5554.999 kb on - strand, within PS417_25730 at 5555.004 kb on + strand, within PS417_25730 at 5555.015 kb on + strand, within PS417_25730 at 5555.015 kb on + strand, within PS417_25730 at 5555.015 kb on + strand, within PS417_25730 at 5555.095 kb on + strand, within PS417_25730 at 5555.181 kb on + strand, within PS417_25730 at 5556.320 kb on + strand at 5556.320 kb on + strand at 5556.321 kb on - strand at 5556.321 kb on - strand at 5556.321 kb on - strand at 5556.321 kb on - strand at 5556.322 kb on + strand at 5556.323 kb on - strand at 5556.353 kb on + strand at 5556.353 kb on + strand at 5556.353 kb on + strand at 5556.368 kb on + strand at 5556.368 kb on + strand at 5556.369 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 5,553,893 + PS417_25725 0.44 -3.3 5,553,893 + PS417_25725 0.44 -4.7 5,553,893 + PS417_25725 0.44 -5.4 5,553,894 - PS417_25725 0.44 -3.7 5,553,894 - PS417_25725 0.44 -3.3 5,553,894 - PS417_25725 0.44 -6.3 5,553,899 + PS417_25725 0.45 -1.9 5,553,899 + PS417_25725 0.45 -4.4 5,553,899 + PS417_25725 0.45 -4.0 5,553,899 + PS417_25725 0.45 -5.6 5,553,899 + PS417_25725 0.45 -3.9 5,553,900 - PS417_25725 0.45 -3.5 5,553,900 - PS417_25725 0.45 -3.2 5,554,011 + PS417_25725 0.52 -3.9 5,554,011 + PS417_25725 0.52 -2.6 5,554,011 + PS417_25725 0.52 -2.3 5,554,013 + PS417_25725 0.52 -2.7 5,554,013 + PS417_25725 0.52 -4.3 5,554,014 - PS417_25725 0.52 -2.7 5,554,014 - PS417_25725 0.52 -2.6 5,554,014 - PS417_25725 0.52 -3.4 5,554,014 - PS417_25725 0.52 -5.7 5,554,043 + PS417_25725 0.54 -5.7 5,554,044 - PS417_25725 0.54 -2.6 5,554,044 - PS417_25725 0.54 -2.8 5,554,057 - PS417_25725 0.55 -4.3 5,554,243 + PS417_25725 0.68 -2.8 5,554,355 + PS417_25725 0.75 -3.8 5,554,355 + PS417_25725 0.75 -2.1 5,554,356 - PS417_25725 0.75 -3.3 5,554,409 + PS417_25725 0.79 -4.6 5,554,409 + PS417_25725 0.79 -4.4 5,554,410 - -1.3 5,554,508 - PS417_25725 0.86 -3.7 5,554,597 - -3.9 5,554,680 - -1.5 5,554,723 - -1.8 5,554,744 + -2.4 5,554,755 + -1.5 5,554,901 + PS417_25730 0.14 -2.6 5,554,902 - PS417_25730 0.14 -1.2 5,554,998 + PS417_25730 0.25 +0.1 5,554,999 - PS417_25730 0.26 -0.5 5,555,004 + PS417_25730 0.26 -0.9 5,555,015 + PS417_25730 0.27 -0.1 5,555,015 + PS417_25730 0.27 +1.1 5,555,015 + PS417_25730 0.27 +0.3 5,555,095 + PS417_25730 0.37 +0.5 5,555,181 + PS417_25730 0.48 +0.3 5,556,320 + -0.5 5,556,320 + +0.1 5,556,321 - -0.1 5,556,321 - +0.0 5,556,321 - -0.0 5,556,321 - +0.3 5,556,322 + +0.6 5,556,323 - -0.9 5,556,353 + -0.2 5,556,353 + +0.5 5,556,353 + +0.1 5,556,368 + +1.3 5,556,368 + +0.5 5,556,369 - +0.0
Or see this region's nucleotide sequence