Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25670 and PS417_25675 are separated by 70 nucleotides PS417_25675 and PS417_25680 are separated by 63 nucleotides PS417_25680 and PS417_25685 are separated by 46 nucleotides
PS417_25670: PS417_25670 - 2-nitropropane dioxygenase, at 5,544,522 to 5,545,484
_25670
PS417_25675: PS417_25675 - membrane protein, at 5,545,555 to 5,546,511
_25675
PS417_25680: PS417_25680 - short-chain dehydrogenase, at 5,546,575 to 5,547,363
_25680
PS417_25685: PS417_25685 - zinc-binding protein, at 5,547,410 to 5,547,748
_25685
Position (kb) 5545
5546
5547 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5544.825 kb on - strand, within PS417_25670 at 5544.853 kb on + strand, within PS417_25670 at 5544.854 kb on - strand, within PS417_25670 at 5544.862 kb on + strand, within PS417_25670 at 5545.111 kb on - strand, within PS417_25670 at 5545.161 kb on + strand, within PS417_25670 at 5545.357 kb on + strand, within PS417_25670 at 5545.358 kb on - strand, within PS417_25670 at 5545.426 kb on + strand at 5545.426 kb on + strand at 5545.426 kb on + strand at 5545.426 kb on + strand at 5545.522 kb on + strand at 5545.522 kb on + strand at 5545.736 kb on - strand, within PS417_25675 at 5545.904 kb on - strand, within PS417_25675 at 5546.069 kb on + strand, within PS417_25675 at 5546.115 kb on - strand, within PS417_25675 at 5546.164 kb on + strand, within PS417_25675 at 5546.248 kb on + strand, within PS417_25675 at 5546.383 kb on - strand, within PS417_25675 at 5546.395 kb on + strand, within PS417_25675 at 5546.395 kb on + strand, within PS417_25675 at 5546.395 kb on + strand, within PS417_25675 at 5546.492 kb on + strand at 5546.493 kb on - strand at 5547.028 kb on + strand at 5547.028 kb on + strand, within PS417_25680 at 5547.029 kb on - strand, within PS417_25680 at 5547.029 kb on - strand, within PS417_25680 at 5547.032 kb on - strand at 5547.032 kb on - strand, within PS417_25680 at 5547.046 kb on + strand, within PS417_25680 at 5547.046 kb on + strand, within PS417_25680 at 5547.046 kb on + strand, within PS417_25680 at 5547.047 kb on - strand, within PS417_25680 at 5547.047 kb on - strand, within PS417_25680 at 5547.047 kb on - strand, within PS417_25680 at 5547.047 kb on - strand, within PS417_25680 at 5547.217 kb on + strand, within PS417_25680 at 5547.217 kb on + strand, within PS417_25680 at 5547.218 kb on - strand, within PS417_25680 at 5547.218 kb on - strand, within PS417_25680 at 5547.349 kb on + strand at 5547.350 kb on - strand at 5547.373 kb on + strand at 5547.374 kb on - strand at 5547.394 kb on + strand at 5547.395 kb on - strand at 5547.447 kb on + strand, within PS417_25685 at 5547.447 kb on + strand, within PS417_25685 at 5547.448 kb on - strand, within PS417_25685 at 5547.465 kb on - strand, within PS417_25685 at 5547.465 kb on - strand, within PS417_25685
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 5,544,825 - PS417_25670 0.31 +0.1 5,544,853 + PS417_25670 0.34 +0.5 5,544,854 - PS417_25670 0.34 +1.3 5,544,862 + PS417_25670 0.35 -0.5 5,545,111 - PS417_25670 0.61 +1.5 5,545,161 + PS417_25670 0.66 +0.9 5,545,357 + PS417_25670 0.87 -0.1 5,545,358 - PS417_25670 0.87 +0.0 5,545,426 + -1.3 5,545,426 + -0.1 5,545,426 + +0.8 5,545,426 + +0.7 5,545,522 + -1.3 5,545,522 + -0.7 5,545,736 - PS417_25675 0.19 +0.7 5,545,904 - PS417_25675 0.36 +0.3 5,546,069 + PS417_25675 0.54 +0.2 5,546,115 - PS417_25675 0.59 +1.8 5,546,164 + PS417_25675 0.64 -2.2 5,546,248 + PS417_25675 0.72 +1.2 5,546,383 - PS417_25675 0.87 -0.2 5,546,395 + PS417_25675 0.88 +0.5 5,546,395 + PS417_25675 0.88 +0.1 5,546,395 + PS417_25675 0.88 +0.3 5,546,492 + +0.1 5,546,493 - -0.0 5,547,028 + +0.7 5,547,028 + PS417_25680 0.57 -0.1 5,547,029 - PS417_25680 0.58 +0.3 5,547,029 - PS417_25680 0.58 -0.1 5,547,032 - -0.7 5,547,032 - PS417_25680 0.58 +0.1 5,547,046 + PS417_25680 0.60 +0.2 5,547,046 + PS417_25680 0.60 +0.6 5,547,046 + PS417_25680 0.60 -0.8 5,547,047 - PS417_25680 0.60 -0.1 5,547,047 - PS417_25680 0.60 -0.0 5,547,047 - PS417_25680 0.60 +0.3 5,547,047 - PS417_25680 0.60 +0.4 5,547,217 + PS417_25680 0.81 +0.5 5,547,217 + PS417_25680 0.81 -0.2 5,547,218 - PS417_25680 0.81 -0.7 5,547,218 - PS417_25680 0.81 +0.9 5,547,349 + +0.4 5,547,350 - +0.1 5,547,373 + -1.0 5,547,374 - +0.1 5,547,394 + +0.5 5,547,395 - +2.5 5,547,447 + PS417_25685 0.11 +0.7 5,547,447 + PS417_25685 0.11 +0.3 5,547,448 - PS417_25685 0.11 -0.1 5,547,465 - PS417_25685 0.16 +0.7 5,547,465 - PS417_25685 0.16 +0.7
Or see this region's nucleotide sequence