Strain Fitness in Pseudomonas simiae WCS417 around PS417_20030

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_20020 and PS417_20025 are separated by 2 nucleotidesPS417_20025 and PS417_20030 overlap by 4 nucleotidesPS417_20030 and PS417_20035 overlap by 4 nucleotidesPS417_20035 and PS417_20040 are separated by 91 nucleotides PS417_20020: PS417_20020 - cobalamin synthase, at 4,346,019 to 4,346,747 _20020 PS417_20025: PS417_20025 - alpha-ribazole phosphatase, at 4,346,750 to 4,347,325 _20025 PS417_20030: PS417_20030 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 4,347,322 to 4,348,377 _20030 PS417_20035: PS417_20035 - adenosylcobinamide kinase, at 4,348,374 to 4,348,895 _20035 PS417_20040: PS417_20040 - cobyric acid synthase, at 4,348,987 to 4,350,438 _20040 Position (kb) 4347 4348 4349Strain fitness (log2 ratio) -1 0 1 2 3at 4346.864 kb on + strand, within PS417_20025at 4346.917 kb on - strand, within PS417_20025at 4347.582 kb on + strand, within PS417_20030at 4347.583 kb on - strand, within PS417_20030at 4347.583 kb on - strand, within PS417_20030at 4347.709 kb on + strand, within PS417_20030at 4348.807 kb on + strand, within PS417_20035at 4348.807 kb on + strand, within PS417_20035at 4348.807 kb on + strand, within PS417_20035at 4348.807 kb on + strand, within PS417_20035at 4348.807 kb on + strand, within PS417_20035at 4348.808 kb on - strand, within PS417_20035at 4348.808 kb on - strand, within PS417_20035at 4348.808 kb on - strand, within PS417_20035at 4348.808 kb on - strand, within PS417_20035at 4348.978 kb on + strandat 4349.165 kb on + strand, within PS417_20040at 4349.165 kb on + strand, within PS417_20040at 4349.166 kb on - strand, within PS417_20040

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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4,346,864 + PS417_20025 0.20 +2.5
4,346,917 - PS417_20025 0.29 +3.2
4,347,582 + PS417_20030 0.25 +2.1
4,347,583 - PS417_20030 0.25 +2.4
4,347,583 - PS417_20030 0.25 +2.9
4,347,709 + PS417_20030 0.37 +3.3
4,348,807 + PS417_20035 0.83 +2.9
4,348,807 + PS417_20035 0.83 +2.9
4,348,807 + PS417_20035 0.83 +2.8
4,348,807 + PS417_20035 0.83 +2.9
4,348,807 + PS417_20035 0.83 +2.7
4,348,808 - PS417_20035 0.83 +3.1
4,348,808 - PS417_20035 0.83 +2.8
4,348,808 - PS417_20035 0.83 +3.0
4,348,808 - PS417_20035 0.83 +3.0
4,348,978 + -0.2
4,349,165 + PS417_20040 0.12 +2.8
4,349,165 + PS417_20040 0.12 +2.3
4,349,166 - PS417_20040 0.12 +2.6

Or see this region's nucleotide sequence