Strain Fitness in Pseudomonas simiae WCS417 around PS417_17470

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17460 and PS417_17465 are separated by 78 nucleotidesPS417_17465 and PS417_17470 are separated by 38 nucleotidesPS417_17470 and PS417_17475 overlap by 4 nucleotides PS417_17460: PS417_17460 - Quinoprotein ethanol dehydrogenase QedA (EC 1.1.2.8) (from data), at 3,814,151 to 3,815,998 _17460 PS417_17465: PS417_17465 - hypothetical protein, at 3,816,077 to 3,816,724 _17465 PS417_17470: PS417_17470 - LuxR family transcriptional regulator, at 3,816,763 to 3,817,389 _17470 PS417_17475: PS417_17475 - histidine kinase, at 3,817,386 to 3,818,648 _17475 Position (kb) 3816 3817 3818Strain fitness (log2 ratio) -1 0 1at 3815.855 kb on + strandat 3815.855 kb on + strandat 3815.856 kb on - strandat 3815.856 kb on - strandat 3816.660 kb on - strandat 3817.022 kb on + strand, within PS417_17470at 3817.022 kb on + strand, within PS417_17470at 3817.023 kb on - strand, within PS417_17470at 3817.739 kb on + strand, within PS417_17475at 3818.100 kb on - strand, within PS417_17475at 3818.155 kb on - strand, within PS417_17475

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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3,815,855 + +1.0
3,815,855 + -1.1
3,815,856 - +0.1
3,815,856 - +0.4
3,816,660 - -0.6
3,817,022 + PS417_17470 0.41 +0.5
3,817,022 + PS417_17470 0.41 +0.4
3,817,023 - PS417_17470 0.41 +0.6
3,817,739 + PS417_17475 0.28 +0.3
3,818,100 - PS417_17475 0.57 +0.6
3,818,155 - PS417_17475 0.61 -0.7

Or see this region's nucleotide sequence